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Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh

Author

Listed:
  • Md Mamun Monir

    (Infectious diseases division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Mohammad Tarequl Islam

    (Infectious diseases division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Razib Mazumder

    (Laboratory Sciences and Services Division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Dinesh Mondal

    (Laboratory Sciences and Services Division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Kazi Sumaita Nahar

    (Infectious diseases division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Marzia Sultana

    (Infectious diseases division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Masatomo Morita

    (National Institute of Infectious Diseases (NIID))

  • Makoto Ohnishi

    (National Institute of Infectious Diseases (NIID))

  • Anwar Huq

    (University of Maryland)

  • Haruo Watanabe

    (National Institute of Infectious Diseases (NIID))

  • Firdausi Qadri

    (Infectious diseases division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Mustafizur Rahman

    (Infectious diseases division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Nicholas Thomson

    (Parasites and Microbes Programme, Wellcome Sanger Institute, Wellcome Genome Campus
    London School of Hygiene and Tropical Medicine)

  • Kimberley Seed

    (University of California)

  • Rita R. Colwell

    (University of Maryland
    Johns Hopkins Bloomberg School of Public Health)

  • Tahmeed Ahmed

    (Nutrition and Clinical Services Division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

  • Munirul Alam

    (Infectious diseases division, icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh))

Abstract

In 2022, one of its worst cholera outbreaks began in Bangladesh and the icddr,b Dhaka hospital treated more than 1300 patients and ca. 42,000 diarrheal cases from March-1 to April-10, 20221. Here, we present genomic attributes of V. cholerae O1 responsible for the 2022 Dhaka outbreak and 960 7th pandemic El Tor (7PET) strains from 88 countries. Results show strains isolated during the Dhaka outbreak cluster with 7PET wave-3 global clade strains, but comprise subclade BD-1.2, for which the most recent common ancestor appears to be that responsible for recent endemic cholera in India. BD-1.2 strains are present in Bangladesh since 2016, but not establishing dominance over BD-2 lineage strains2 until 2018 and predominantly associated with endemic cholera. In conclusion, the recent shift in lineage and genetic attributes, including serotype switching of BD-1.2 from Ogawa to Inaba, may explain the increasing number of cholera cases in Bangladesh.

Suggested Citation

  • Md Mamun Monir & Mohammad Tarequl Islam & Razib Mazumder & Dinesh Mondal & Kazi Sumaita Nahar & Marzia Sultana & Masatomo Morita & Makoto Ohnishi & Anwar Huq & Haruo Watanabe & Firdausi Qadri & Mustaf, 2023. "Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh," Nature Communications, Nature, vol. 14(1), pages 1-8, December.
    • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36687-7
    DOI: 10.1038/s41467-023-36687-7
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    1. Ankur Mutreja & Dong Wook Kim & Nicholas R. Thomson & Thomas R. Connor & Je Hee Lee & Samuel Kariuki & Nicholas J. Croucher & Seon Young Choi & Simon R. Harris & Michael Lebens & Swapan Kumar Niyogi &, 2011. "Evidence for several waves of global transmission in the seventh cholera pandemic," Nature, Nature, vol. 477(7365), pages 462-465, September.
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    1. Yun Luo & Michael Payne & Sandeep Kaur & Sophie Octavia & Ruiting Lan, 2024. "Genomic evidence of two-staged transmission of the early seventh cholera pandemic," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    2. Alexandre Maciel-Guerra & Kubra Babaarslan & Michelle Baker & Aura Rahman & Maqsud Hossain & Abdus Sadique & Jahidul Alam & Salim Uzzaman & Mohammad Ferdous Rahman Sarker & Nasrin Sultana & Ashraful I, 2024. "Core and accessory genomic traits of Vibrio cholerae O1 drive lineage transmission and disease severity," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
    3. Chrispin Chaguza & Innocent Chibwe & David Chaima & Patrick Musicha & Latif Ndeketa & Watipaso Kasambara & Chimwemwe Mhango & Upendo L. Mseka & Joseph Bitilinyu-Bangoh & Bernard Mvula & Wakisa Kipandu, 2024. "Genomic insights into the 2022–2023Vibrio cholerae outbreak in Malawi," Nature Communications, Nature, vol. 15(1), pages 1-15, December.

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