IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-38523-4.html
   My bibliography  Save this article

Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems

Author

Listed:
  • S. Emil Ruff

    (University of Calgary
    Marine Biological Laboratory
    Marine Biological Laboratory)

  • Pauline Humez

    (University of Calgary)

  • Isabella Hrabe Angelis

    (University of Calgary
    Max Planck Institute for Chemistry)

  • Muhe Diao

    (University of Calgary)

  • Michael Nightingale

    (University of Calgary)

  • Sara Cho

    (University of Calgary)

  • Liam Connors

    (University of Calgary)

  • Olukayode O. Kuloyo

    (University of Calgary)

  • Alan Seltzer

    (Woods Hole Oceanographic Institution)

  • Samuel Bowman

    (Woods Hole Oceanographic Institution)

  • Scott D. Wankel

    (Woods Hole Oceanographic Institution)

  • Cynthia N. McClain

    (University of Calgary
    Alberta Environment and Protected Areas
    Alberta Biodiversity Monitoring Institute)

  • Bernhard Mayer

    (University of Calgary)

  • Marc Strous

    (University of Calgary)

Abstract

Around 50% of humankind relies on groundwater as a source of drinking water. Here we investigate the age, geochemistry, and microbiology of 138 groundwater samples from 95 monitoring wells (

Suggested Citation

  • S. Emil Ruff & Pauline Humez & Isabella Hrabe Angelis & Muhe Diao & Michael Nightingale & Sara Cho & Liam Connors & Olukayode O. Kuloyo & Alan Seltzer & Samuel Bowman & Scott D. Wankel & Cynthia N. Mc, 2023. "Hydrogen and dark oxygen drive microbial productivity in diverse groundwater ecosystems," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38523-4
    DOI: 10.1038/s41467-023-38523-4
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-38523-4
    File Function: Abstract
    Download Restriction: no
    File URL: https://libkey.io/10.1038/s41467-023-38523-4?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Mohamed F. Haroon & Shihu Hu & Ying Shi & Michael Imelfort & Jurg Keller & Philip Hugenholtz & Zhiguo Yuan & Gene W. Tyson, 2013. "Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage," Nature, Nature, vol. 500(7464), pages 567-570, August.
    2. Katharina F. Ettwig & Margaret K. Butler & Denis Le Paslier & Eric Pelletier & Sophie Mangenot & Marcel M. M. Kuypers & Frank Schreiber & Bas E. Dutilh & Johannes Zedelius & Dirk de Beer & Jolein Gloe, 2010. "Nitrite-driven anaerobic methane oxidation by oxygenic bacteria," Nature, Nature, vol. 464(7288), pages 543-548, March.
    3. Karthik Anantharaman & Christopher T. Brown & Laura A. Hug & Itai Sharon & Cindy J. Castelle & Alexander J. Probst & Brian C. Thomas & Andrea Singh & Michael J. Wilkins & Ulas Karaoz & Eoin L. Brodie , 2016. "Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system," Nature Communications, Nature, vol. 7(1), pages 1-11, December.
    4. Mohamed F. Haroon & Shihu Hu & Ying Shi & Michael Imelfort & Jurg Keller & Philip Hugenholtz & Zhiguo Yuan & Gene W. Tyson, 2013. "Erratum: Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage," Nature, Nature, vol. 501(7468), pages 578-578, September.
    5. Justine F. Sauvage & Ashton Flinders & Arthur J. Spivack & Robert Pockalny & Ann G. Dunlea & Chloe H. Anderson & David C. Smith & Richard W. Murray & Steven D’Hondt, 2021. "The contribution of water radiolysis to marine sedimentary life," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Daniel R. Colman & Lisa M. Keller & Emilia Arteaga-Pozo & Eva Andrade-Barahona & Brian Clair & Anna Shoemaker & Alysia Cox & Eric S. Boyd, 2024. "Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
    2. Sina Schorn & Jon S. Graf & Sten Littmann & Philipp F. Hach & Gaute Lavik & Daan R. Speth & Carsten J. Schubert & Marcel M. M. Kuypers & Jana Milucka, 2024. "Persistent activity of aerobic methane-oxidizing bacteria in anoxic lake waters due to metabolic versatility," Nature Communications, Nature, vol. 15(1), pages 1-14, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. He, Yanying & Li, Yiming & Li, Xuecheng & Liu, Yingrui & Wang, Yufen & Guo, Haixiao & Hou, Jiaqi & Zhu, Tingting & Liu, Yiwen, 2023. "Net-zero greenhouse gas emission from wastewater treatment: Mechanisms, opportunities and perspectives," Renewable and Sustainable Energy Reviews, Elsevier, vol. 184(C).
    2. Mengxiong Wu & Jie Li & Andy O. Leu & Dirk V. Erler & Terra Stark & Gene W. Tyson & Zhiguo Yuan & Simon J. McIlroy & Jianhua Guo, 2022. "Anaerobic oxidation of propane coupled to nitrate reduction by a lineage within the class Symbiobacteriia," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    3. Sina Schorn & Jon S. Graf & Sten Littmann & Philipp F. Hach & Gaute Lavik & Daan R. Speth & Carsten J. Schubert & Marcel M. M. Kuypers & Jana Milucka, 2024. "Persistent activity of aerobic methane-oxidizing bacteria in anoxic lake waters due to metabolic versatility," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    4. Marie C. Schoelmerich & Heleen T. Ouboter & Rohan Sachdeva & Petar I. Penev & Yuki Amano & Jacob West-Roberts & Cornelia U. Welte & Jillian F. Banfield, 2022. "A widespread group of large plasmids in methanotrophic Methanoperedens archaea," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    5. Yue Zheng & Huan Wang & Yan Liu & Peiyu Liu & Baoli Zhu & Yanning Zheng & Jinhua Li & Ludmila Chistoserdova & Zhiyong Jason Ren & Feng Zhao, 2024. "Electrochemically coupled CH4 and CO2 consumption driven by microbial processes," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    6. Marie C. Schoelmerich & Lynn Ly & Jacob West-Roberts & Ling-Dong Shi & Cong Shen & Nikhil S. Malvankar & Najwa Taib & Simonetta Gribaldo & Ben J. Woodcroft & Christopher W. Schadt & Basem Al-Shayeb & , 2024. "Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    7. Scott A. Klasek & Wei-Li Hong & Marta E. Torres & Stella Ross & Katelyn Hostetler & Alexey Portnov & Friederike Gründger & Frederick S. Colwell, 2021. "Distinct methane-dependent biogeochemical states in Arctic seafloor gas hydrate mounds," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
    8. Yaohong Zhang & Fangyuan Wang, 2021. "Different impacts of an electron shuttle on nitrate- and nitrite-dependent anaerobic oxidation of methane in paddy soil," Plant, Soil and Environment, Czech Academy of Agricultural Sciences, vol. 67(5), pages 264-269.
    9. Heleen T. Ouboter & Rob Mesman & Tom Sleutels & Jelle Postma & Martijn Wissink & Mike S. M. Jetten & Annemiek Ter Heijne & Tom Berben & Cornelia U. Welte, 2024. "Mechanisms of extracellular electron transfer in anaerobic methanotrophic archaea," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    10. Xueqin Zhang & Georgina H. Joyce & Andy O. Leu & Jing Zhao & Hesamoddin Rabiee & Bernardino Virdis & Gene W. Tyson & Zhiguo Yuan & Simon J. McIlroy & Shihu Hu, 2023. "Multi-heme cytochrome-mediated extracellular electron transfer by the anaerobic methanotroph ‘Candidatus Methanoperedens nitroreducens’," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    11. Daniel S. Grégoire & Nikhil A. George & Laura A. Hug, 2023. "Microbial methane cycling in a landfill on a decadal time scale," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    12. Aracely Zambrano-Romero & Dario X. Ramirez-Villacis & Gabriel Trueba & Reyes Sierra-Alvarez & Antonio Leon-Reyes & Paul Cardenas & Valeria Ochoa-Herrera, 2022. "Dynamics of Microbial Communities during the Removal of Copper and Zinc in a Sulfate-Reducing Bioreactor with a Limestone Pre-Column System," IJERPH, MDPI, vol. 19(3), pages 1-18, January.
    13. Maktabifard, Mojtaba & Al-Hazmi, Hussein E. & Szulc, Paulina & Mousavizadegan, Mohammad & Xu, Xianbao & Zaborowska, Ewa & Li, Xiang & Mąkinia, Jacek, 2023. "Net-zero carbon condition in wastewater treatment plants: A systematic review of mitigation strategies and challenges," Renewable and Sustainable Energy Reviews, Elsevier, vol. 185(C).
    14. Yunxi Liu & R. A. Leo Elworth & Michael D. Jochum & Kjersti M. Aagaard & Todd J. Treangen, 2022. "De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    15. Kelly J. Whaley-Martin & Lin-Xing Chen & Tara Colenbrander Nelson & Jennifer Gordon & Rose Kantor & Lauren E. Twible & Stephanie Marshall & Sam McGarry & Laura Rossi & Benoit Bessette & Christian Baro, 2023. "O2 partitioning of sulfur oxidizing bacteria drives acidity and thiosulfate distributions in mining waters," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    16. Morten Kam Dahl Dueholm & Marta Nierychlo & Kasper Skytte Andersen & Vibeke Rudkjøbing & Simon Knutsson & Mads Albertsen & Per Halkjær Nielsen, 2022. "MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    17. Devan M. Nisson & Clifford C. Walters & Martha L. Chacón-Patiño & Chad R. Weisbrod & Thomas L. Kieft & Barbara Sherwood Lollar & Oliver Warr & Julio Castillo & Scott M. Perl & Errol D. Cason & Barry M, 2023. "Radiolytically reworked Archean organic matter in a habitable deep ancient high-temperature brine," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    18. Xianzhe Gong & Álvaro Rodríguez Río & Le Xu & Zhiyi Chen & Marguerite V. Langwig & Lei Su & Mingxue Sun & Jaime Huerta-Cepas & Valerie Anda & Brett J. Baker, 2022. "New globally distributed bacterial phyla within the FCB superphylum," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    19. Ernestina Hauptfeld & Nikolaos Pappas & Sandra Iwaarden & Basten L. Snoek & Andrea Aldas-Vargas & Bas E. Dutilh & F. A. Bastiaan Meijenfeldt, 2024. "Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    20. Leonard Ernst & Uladzimir Barayeu & Jonas Hädeler & Tobias P. Dick & Judith M. Klatt & Frank Keppler & Johannes G. Rebelein, 2023. "Methane formation driven by light and heat prior to the origin of life and beyond," Nature Communications, Nature, vol. 14(1), pages 1-10, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38523-4. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.