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Selection-driven trait loss in independently evolved cavefish populations

Author

Listed:
  • Rachel L. Moran

    (University of Minnesota
    Texas A&M University)

  • Emilie J. Richards

    (University of Minnesota)

  • Claudia Patricia Ornelas-García

    (Universidad Nacional Autónoma de México, Tercer Circuito Exterior S/N. CP 04510, D. F. México)

  • Joshua B. Gross

    (University of Cincinnati)

  • Alexandra Donny

    (University of Minnesota)

  • Jonathan Wiese

    (University of Minnesota)

  • Alex C. Keene

    (Texas A&M University)

  • Johanna E. Kowalko

    (Lehigh University)

  • Nicolas Rohner

    (Stowers Institute for Medical Research
    KU Medical Center)

  • Suzanne E. McGaugh

    (University of Minnesota)

Abstract

Laboratory studies have demonstrated that a single phenotype can be produced by many different genotypes; however, in natural systems, it is frequently found that phenotypic convergence is due to parallel genetic changes. This suggests a substantial role for constraint and determinism in evolution and indicates that certain mutations are more likely to contribute to phenotypic evolution. Here we use whole genome resequencing in the Mexican tetra, Astyanax mexicanus, to investigate how selection has shaped the repeated evolution of both trait loss and enhancement across independent cavefish lineages. We show that selection on standing genetic variation and de novo mutations both contribute substantially to repeated adaptation. Our findings provide empirical support for the hypothesis that genes with larger mutational targets are more likely to be the substrate of repeated evolution and indicate that features of the cave environment may impact the rate at which mutations occur.

Suggested Citation

  • Rachel L. Moran & Emilie J. Richards & Claudia Patricia Ornelas-García & Joshua B. Gross & Alexandra Donny & Jonathan Wiese & Alex C. Keene & Johanna E. Kowalko & Nicolas Rohner & Suzanne E. McGaugh, 2023. "Selection-driven trait loss in independently evolved cavefish populations," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37909-8
    DOI: 10.1038/s41467-023-37909-8
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    References listed on IDEAS

    as
    1. Joseph K Pickrell & Jonathan K Pritchard, 2012. "Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data," PLOS Genetics, Public Library of Science, vol. 8(11), pages 1-17, November.
    2. Andrew Beale & Christophe Guibal & T. Katherine Tamai & Linda Klotz & Sophie Cowen & Elodie Peyric & Víctor H. Reynoso & Yoshiyuki Yamamoto & David Whitmore, 2013. "Circadian rhythms in Mexican blind cavefish Astyanax mexicanus in the lab and in the field," Nature Communications, Nature, vol. 4(1), pages 1-10, December.
    3. Paul D. Sniegowski & Philip J. Gerrish & Richard E. Lenski, 1997. "Evolution of high mutation rates in experimental populations of E. coli," Nature, Nature, vol. 387(6634), pages 703-705, June.
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