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ESCRT-dependent STING degradation inhibits steady-state and cGAMP-induced signalling

Author

Listed:
  • Matteo Gentili

    (Broad Institute of MIT and Harvard)

  • Bingxu Liu

    (Broad Institute of MIT and Harvard
    Massachusetts Institute of Technology
    The Koch Institute for Integrative Cancer Research at MIT)

  • Malvina Papanastasiou

    (Broad Institute of MIT and Harvard)

  • Deborah Dele-Oni

    (Broad Institute of MIT and Harvard)

  • Marc A. Schwartz

    (Broad Institute of MIT and Harvard
    Harvard Medical School
    Boston Children’s Hospital
    Dana Farber Cancer Institute)

  • Rebecca J. Carlson

    (Broad Institute of MIT and Harvard
    Massachusetts Institute of Technology, Department of Health Sciences and Technology)

  • Aziz M. Al’Khafaji

    (Broad Institute of MIT and Harvard)

  • Karsten Krug

    (Broad Institute of MIT and Harvard)

  • Adam Brown

    (Broad Institute of MIT and Harvard)

  • John G. Doench

    (Broad Institute of MIT and Harvard)

  • Steven A. Carr

    (Broad Institute of MIT and Harvard)

  • Nir Hacohen

    (Broad Institute of MIT and Harvard
    Massachusetts General Hospital, Harvard Medical School
    Center for Cancer Research, Massachusetts General Hospital)

Abstract

Stimulator of interferon genes (STING) is an intracellular sensor of cyclic di-nucleotides involved in the innate immune response against pathogen- or self-derived DNA. STING trafficking is tightly linked to its function, and its dysregulation can lead to disease. Here, we systematically characterize genes regulating STING trafficking and examine their impact on STING-mediated responses. Using proximity-ligation proteomics and genetic screens, we demonstrate that an endosomal sorting complex required for transport (ESCRT) complex containing HGS, VPS37A and UBAP1 promotes STING degradation, thereby terminating STING-mediated signaling. Mechanistically, STING oligomerization increases its ubiquitination by UBE2N, forming a platform for ESCRT recruitment at the endosome that terminates STING signaling via sorting in the lysosome. Finally, we show that expression of a UBAP1 mutant identified in patients with hereditary spastic paraplegia and associated with disrupted ESCRT function, increases steady-state STING-dependent type I IFN responses in healthy primary monocyte-derived dendritic cells and fibroblasts. Based on these findings, we propose that STING is subject to a tonic degradative flux and that the ESCRT complex acts as a homeostatic regulator of STING signaling.

Suggested Citation

  • Matteo Gentili & Bingxu Liu & Malvina Papanastasiou & Deborah Dele-Oni & Marc A. Schwartz & Rebecca J. Carlson & Aziz M. Al’Khafaji & Karsten Krug & Adam Brown & John G. Doench & Steven A. Carr & Nir , 2023. "ESCRT-dependent STING degradation inhibits steady-state and cGAMP-induced signalling," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36132-9
    DOI: 10.1038/s41467-023-36132-9
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    References listed on IDEAS

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    1. Xiang Gui & Hui Yang & Tuo Li & Xiaojun Tan & Peiqing Shi & Minghao Li & Fenghe Du & Zhijian J. Chen, 2019. "Autophagy induction via STING trafficking is a primordial function of the cGAS pathway," Nature, Nature, vol. 567(7747), pages 262-266, March.
    2. Baoyu Zhao & Fenglei Du & Pengbiao Xu & Chang Shu & Banumathi Sankaran & Samantha L. Bell & Mengmeng Liu & Yuanjiu Lei & Xinsheng Gao & Xiaofeng Fu & Fanxiu Zhu & Yang Liu & Arthur Laganowsky & Xueyun, 2019. "A conserved PLPLRT/SD motif of STING mediates the recruitment and activation of TBK1," Nature, Nature, vol. 569(7758), pages 718-722, May.
    3. Simone M. Haag & Muhammet F. Gulen & Luc Reymond & Antoine Gibelin & Laurence Abrami & Alexiane Decout & Michael Heymann & F. Gisou van der Goot & Gerardo Turcatti & Rayk Behrendt & Andrea Ablasser, 2018. "Targeting STING with covalent small-molecule inhibitors," Nature, Nature, vol. 559(7713), pages 269-273, July.
    4. Dara L. Burdette & Kathryn M. Monroe & Katia Sotelo-Troha & Jeff S. Iwig & Barbara Eckert & Mamoru Hyodo & Yoshihiro Hayakawa & Russell E. Vance, 2011. "STING is a direct innate immune sensor of cyclic di-GMP," Nature, Nature, vol. 478(7370), pages 515-518, October.
    5. Ting-Ting Chu & Xintao Tu & Kun Yang & Jianjun Wu & Joyce J. Repa & Nan Yan, 2021. "Tonic prime-boost of STING signalling mediates Niemann–Pick disease type C," Nature, Nature, vol. 596(7873), pages 570-575, August.
    6. Guijun Shang & Conggang Zhang & Zhijian J. Chen & Xiao-chen Bai & Xuewu Zhang, 2019. "Cryo-EM structures of STING reveal its mechanism of activation by cyclic GMP–AMP," Nature, Nature, vol. 567(7748), pages 389-393, March.
    7. Muhammet F. Gulen & Ute Koch & Simone M. Haag & Fabian Schuler & Lionel Apetoh & Andreas Villunger & Freddy Radtke & Andrea Ablasser, 2017. "Signalling strength determines proapoptotic functions of STING," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
    8. Madelyn E. McCauley & Jacqueline Gire O’Rourke & Alberto Yáñez & Janet L. Markman & Ritchie Ho & Xinchen Wang & Shuang Chen & Deepti Lall & Mengyao Jin & A. K. M. G. Muhammad & Shaughn Bell & Jesse La, 2020. "C9orf72 in myeloid cells suppresses STING-induced inflammation," Nature, Nature, vol. 585(7823), pages 96-101, September.
    9. Olivia Majer & Bo Liu & Lieselotte S. M. Kreuk & Nevan Krogan & Gregory M. Barton, 2019. "UNC93B1 recruits syntenin-1 to dampen TLR7 signalling and prevent autoimmunity," Nature, Nature, vol. 575(7782), pages 366-370, November.
    10. Hiroki Ishikawa & Zhe Ma & Glen N. Barber, 2009. "STING regulates intracellular DNA-mediated, type I interferon-dependent innate immunity," Nature, Nature, vol. 461(7265), pages 788-792, October.
    11. Benjamin R. Morehouse & Apurva A. Govande & Adi Millman & Alexander F. A. Keszei & Brianna Lowey & Gal Ofir & Sichen Shao & Rotem Sorek & Philip J. Kranzusch, 2020. "STING cyclic dinucleotide sensing originated in bacteria," Nature, Nature, vol. 586(7829), pages 429-433, October.
    12. Hiroki Ishikawa & Glen N. Barber, 2008. "Erratum: STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling," Nature, Nature, vol. 456(7219), pages 274-274, November.
    13. Hiroki Ishikawa & Glen N. Barber, 2008. "STING is an endoplasmic reticulum adaptor that facilitates innate immune signalling," Nature, Nature, vol. 455(7213), pages 674-678, October.
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