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N6-methyladenosine modification governs liver glycogenesis by stabilizing the glycogen synthase 2 mRNA

Author

Listed:
  • Xiang Zhang

    (Fourth Military Medical University
    Fourth Military Medical University)

  • Huilong Yin

    (Fourth Military Medical University
    Xinxiang Medical University
    Xinxiang Medical University)

  • Xiaofang Zhang

    (Fourth Military Medical University)

  • Xunliang Jiang

    (Fourth Military Medical University)

  • Yongkang Liu

    (Fourth Military Medical University)

  • Haolin Zhang

    (Fourth Military Medical University)

  • Yingran Peng

    (Fourth Military Medical University)

  • Da Li

    (Fourth Military Medical University)

  • Yanping Yu

    (Fourth Military Medical University
    Shaanxi Provincial Tumor Hospital)

  • Jinbao Zhang

    (Fourth Military Medical University)

  • Shuli Cheng

    (Fourth Military Medical University
    Xi’an Jiaotong University)

  • Angang Yang

    (Xinxiang Medical University
    Xinxiang Medical University
    Fourth Military Medical University)

  • Rui Zhang

    (Fourth Military Medical University
    Fourth Military Medical University)

Abstract

Hepatic glycogen is the main source of blood glucose and controls the intervals between meals in mammals. Hepatic glycogen storage in mammalian pups is insufficient compared to their adult counterparts; however, the detailed molecular mechanism is poorly understood. Here, we show that, similar to glycogen storage pattern, N6-methyladenosine (m6A) modification in mRNAs gradually increases during the growth of mice in liver. Strikingly, in the hepatocyte-specific Mettl3 knockout mice, loss of m6A modification disrupts liver glycogen storage. On the mechanism, mRNA of Gys2, the liver-specific glycogen synthase, is a substrate of METTL3 and plays a critical role in m6A-mediated glycogenesis. Furthermore, IGF2BP2, a “reader” protein of m6A, stabilizes the mRNA of Gys2. More importantly, reconstitution of GYS2 almost rescues liver glycogenesis in Mettl3-cKO mice. Collectively, a METTL3-IGF2BP2-GYS2 axis, in which METTL3 and IGF2BP2 regulate glycogenesis as “writer” and “reader” proteins respectively, is essential on maintenance of liver glycogenesis in mammals.

Suggested Citation

  • Xiang Zhang & Huilong Yin & Xiaofang Zhang & Xunliang Jiang & Yongkang Liu & Haolin Zhang & Yingran Peng & Da Li & Yanping Yu & Jinbao Zhang & Shuli Cheng & Angang Yang & Rui Zhang, 2022. "N6-methyladenosine modification governs liver glycogenesis by stabilizing the glycogen synthase 2 mRNA," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34808-2
    DOI: 10.1038/s41467-022-34808-2
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    1. Huilong Yin & Xiang Zhang & Pengyuan Yang & Xiaofang Zhang & Yingran Peng & Da Li & Yanping Yu & Ye Wu & Yidi Wang & Jinbao Zhang & Xiaochen Ding & Xiangpeng Wang & Angang Yang & Rui Zhang, 2021. "RNA m6A methylation orchestrates cancer growth and metastasis via macrophage reprogramming," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
    2. Hao Du & Ya Zhao & Jinqiu He & Yao Zhang & Hairui Xi & Mofang Liu & Jinbiao Ma & Ligang Wu, 2016. "YTHDF2 destabilizes m6A-containing RNA through direct recruitment of the CCR4–NOT deadenylase complex," Nature Communications, Nature, vol. 7(1), pages 1-11, November.
    3. Yang Xiang & Benoit Laurent & Chih-Hung Hsu & Sigrid Nachtergaele & Zhike Lu & Wanqiang Sheng & Chuanyun Xu & Hao Chen & Jian Ouyang & Siqing Wang & Dominic Ling & Pang-Hung Hsu & Lee Zou & Ashwini Ja, 2017. "RNA m6A methylation regulates the ultraviolet-induced DNA damage response," Nature, Nature, vol. 543(7646), pages 573-576, March.
    4. Jennifer M. Petrosino & Scott A. Hinger & Volha A. Golubeva & Juan M. Barajas & Lisa E. Dorn & Chitra C. Iyer & Hui-Lung Sun & W. David Arnold & Chuan He & Federica Accornero, 2022. "The m6A methyltransferase METTL3 regulates muscle maintenance and growth in mice," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    5. Dan Dominissini & Sharon Moshitch-Moshkovitz & Schraga Schwartz & Mali Salmon-Divon & Lior Ungar & Sivan Osenberg & Karen Cesarkas & Jasmine Jacob-Hirsch & Ninette Amariglio & Martin Kupiec & Rotem So, 2012. "Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq," Nature, Nature, vol. 485(7397), pages 201-206, May.
    6. Xiang Wang & Jing Feng & Yuan Xue & Zeyuan Guan & Delin Zhang & Zhu Liu & Zhou Gong & Qiang Wang & Jinbo Huang & Chun Tang & Tingting Zou & Ping Yin, 2016. "Structural basis of N6-adenosine methylation by the METTL3–METTL14 complex," Nature, Nature, vol. 534(7608), pages 575-578, June.
    7. Eliza Yankova & Wesley Blackaby & Mark Albertella & Justyna Rak & Etienne Braekeleer & Georgia Tsagkogeorga & Ewa S. Pilka & Demetrios Aspris & Dan Leggate & Alan G. Hendrick & Natalie A. Webster & By, 2021. "Small-molecule inhibition of METTL3 as a strategy against myeloid leukaemia," Nature, Nature, vol. 593(7860), pages 597-601, May.
    8. Song Zhu & Ji-Zhong Wang & De Chen & Yu-Tian He & Nan Meng & Min Chen & Rui-Xun Lu & Xin-Hui Chen & Xiao-Lan Zhang & Guang-Rong Yan, 2020. "An oncopeptide regulates m6A recognition by the m6A reader IGF2BP1 and tumorigenesis," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
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