IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-33173-4.html
   My bibliography  Save this article

Structural basis of adhesion GPCR GPR110 activation by stalk peptide and G-proteins coupling

Author

Listed:
  • Xinyan Zhu

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Yu Qian

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Xiaowan Li

    (Laboratory of Neuroscience, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Zhenmei Xu

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Ruixue Xia

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Na Wang

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Jiale Liang

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Han Yin

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Anqi Zhang

    (HIT Center for Life Sciences, School of Life Science and Technology, Harbin Institute of Technology)

  • Changyou Guo

    (HIT Center for Life Sciences, School of Life Science and Technology, Harbin Institute of Technology)

  • Guangfu Wang

    (Laboratory of Neuroscience, HIT Center for Life Sciences, Harbin Institute of Technology)

  • Yuanzheng He

    (Laboratory of Receptor Structure and Signaling, HIT Center for Life Sciences, Harbin Institute of Technology)

Abstract

Adhesion G protein-coupled receptors (aGPCRs) are keys of many physiological events and attractive targets for various diseases. aGPCRs are also known to be capable of self-activation via an autoproteolysis process that removes the inhibitory GAIN domain on the extracellular side of receptor and releases a stalk peptide to bind and activate the transmembrane side of receptor. However, the detailed mechanism of aGPCR activation remains elusive. Here, we report the cryo-electron microscopy structures of GPR110 (ADGRF1), a member of aGPCR, in complex with Gq, Gs, Gi, G12 and G13. The structures reveal distinctive ligand engaging model and activation conformations of GPR110. The structures also unveil the rarely explored GPCR/G12 and GPCR/G13 engagements. A comparison of Gq, Gs, Gi, G12 and G13 engagements with GPR110 reveals details of G-protein engagement, including a dividing point at the far end of the alpha helix 5 (αH5) of Gα subunit that separates Gq/Gs engagements from Gi/G12/G13 engagements. This is also where Gq/Gs bind the receptor through both hydrophobic and polar interaction, while Gi/G12/G13 engage receptor mainly through hydrophobic interaction. We further provide physiological evidence of GPR110 activation via stalk peptide. Taken together, our study fills the missing information of GPCR/G-protein engagement and provides a framework for understanding aGPCR activation and GPR110 signaling.

Suggested Citation

  • Xinyan Zhu & Yu Qian & Xiaowan Li & Zhenmei Xu & Ruixue Xia & Na Wang & Jiale Liang & Han Yin & Anqi Zhang & Changyou Guo & Guangfu Wang & Yuanzheng He, 2022. "Structural basis of adhesion GPCR GPR110 activation by stalk peptide and G-proteins coupling," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33173-4
    DOI: 10.1038/s41467-022-33173-4
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-33173-4
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-022-33173-4?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Yu-Qi Ping & Chunyou Mao & Peng Xiao & Ru-Jia Zhao & Yi Jiang & Zhao Yang & Wen-Tao An & Dan-Dan Shen & Fan Yang & Huibing Zhang & Changxiu Qu & Qingya Shen & Caiping Tian & Zi-jian Li & Shaolong Li &, 2021. "Structures of the glucocorticoid-bound adhesion receptor GPR97–Go complex," Nature, Nature, vol. 589(7843), pages 620-626, January.
    2. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    3. Shoji Maeda & Antoine Koehl & Hugues Matile & Hongli Hu & Daniel Hilger & Gebhard F. X. Schertler & Aashish Manglik & Georgios Skiniotis & Roger J. P. Dawson & Brian K. Kobilka, 2018. "Development of an antibody fragment that stabilizes GPCR/G-protein complexes," Nature Communications, Nature, vol. 9(1), pages 1-9, December.
    4. Xiangli Qu & Na Qiu & Mu Wang & Bingjie Zhang & Juan Du & Zhiwei Zhong & Wei Xu & Xiaojing Chu & Limin Ma & Cuiying Yi & Shuo Han & Wenqing Shui & Qiang Zhao & Beili Wu, 2022. "Structural basis of tethered agonism of the adhesion GPCRs ADGRD1 and ADGRF1," Nature, Nature, vol. 604(7907), pages 779-785, April.
    5. Na Wang & Xinheng He & Jing Zhao & Hualiang Jiang & Xi Cheng & Yu Xia & H. Eric Xu & Yuanzheng He, 2022. "Structural basis of leukotriene B4 receptor 1 activation," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    6. Tilman Flock & Alexander S. Hauser & Nadia Lund & David E. Gloriam & Santhanam Balaji & M. Madan Babu, 2017. "Selectivity determinants of GPCR–G-protein binding," Nature, Nature, vol. 545(7654), pages 317-322, May.
    7. Yue Wang & Shimeng Guo & Youwen Zhuang & Ying Yun & Peiyu Xu & Xinheng He & Jia Guo & Wanchao Yin & H. Eric Xu & Xin Xie & Yi Jiang, 2021. "Molecular recognition of an acyl-peptide hormone and activation of ghrelin receptor," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    8. Jie Yin & Kuang-Yui M. Chen & Mary J. Clark & Mahdi Hijazi & Punita Kumari & Xiao-chen Bai & Roger K. Sunahara & Patrick Barth & Daniel M. Rosenbaum, 2020. "Structure of a D2 dopamine receptor–G-protein complex in a lipid membrane," Nature, Nature, vol. 584(7819), pages 125-129, August.
    9. Ji-Won Lee & Bill X. Huang & HeungSun Kwon & Md Abdur Rashid & Giorgi Kharebava & Abhishek Desai & Samarjit Patnaik & Juan Marugan & Hee-Yong Kim, 2016. "Orphan GPR110 (ADGRF1) targeted by N-docosahexaenoylethanolamine in development of neurons and cognitive function," Nature Communications, Nature, vol. 7(1), pages 1-16, December.
    10. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    11. Jia Duan & Dan-dan Shen & X. Edward Zhou & Peng Bi & Qiu-feng Liu & Yang-xia Tan & You-wen Zhuang & Hui-bing Zhang & Pei-yu Xu & Si-Jie Huang & Shan-shan Ma & Xin-heng He & Karsten Melcher & Yan Zhang, 2020. "Cryo-EM structure of an activated VIP1 receptor-G protein complex revealed by a NanoBiT tethering strategy," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
    12. Peng Xiao & Shengchao Guo & Xin Wen & Qing-Tao He & Hui Lin & Shen-Ming Huang & Lu Gou & Chao Zhang & Zhao Yang & Ya-Ni Zhong & Chuan-Cheng Yang & Yu Li & Zheng Gong & Xiao-Na Tao & Zhi-Shuai Yang & Y, 2022. "Tethered peptide activation mechanism of the adhesion GPCRs ADGRG2 and ADGRG4," Nature, Nature, vol. 604(7907), pages 771-778, April.
    13. Ximena Barros-Álvarez & Robert M. Nwokonko & Alexander Vizurraga & Donna Matzov & Feng He & Makaía M. Papasergi-Scott & Michael J. Robertson & Ouliana Panova & Eliane Hadas Yardeni & Alpay B. Seven & , 2022. "The tethered peptide activation mechanism of adhesion GPCRs," Nature, Nature, vol. 604(7907), pages 757-762, April.
    14. Yan Zhang & Bingfa Sun & Dan Feng & Hongli Hu & Matthew Chu & Qianhui Qu & Jeffrey T. Tarrasch & Shane Li & Tong Sun Kobilka & Brian K. Kobilka & Georgios Skiniotis, 2017. "Cryo-EM structure of the activated GLP-1 receptor in complex with a G protein," Nature, Nature, vol. 546(7657), pages 248-253, June.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Yu Qian & Zhengxiong Ma & Zhenmei Xu & Yaning Duan & Yangjie Xiong & Ruixue Xia & Xinyan Zhu & Zongwei Zhang & Xinyu Tian & Han Yin & Jian Liu & Jing Song & Yang Lu & Anqi Zhang & Changyou Guo & Lihua, 2024. "Structural basis of Frizzled 4 in recognition of Dishevelled 2 unveils mechanism of WNT signaling activation," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    2. Ruixue Xia & Shuang Shi & Zhenmei Xu & Henry F. Vischer & Albert D. Windhorst & Yu Qian & Yaning Duan & Jiale Liang & Kai Chen & Anqi Zhang & Changyou Guo & Rob Leurs & Yuanzheng He, 2024. "Structural basis of ligand recognition and design of antihistamines targeting histamine H4 receptor," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    3. Jiale Liang & Asuka Inoue & Tatsuya Ikuta & Ruixue Xia & Na Wang & Kouki Kawakami & Zhenmei Xu & Yu Qian & Xinyan Zhu & Anqi Zhang & Changyou Guo & Zhiwei Huang & Yuanzheng He, 2023. "Structural basis of lysophosphatidylserine receptor GPR174 ligand recognition and activation," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    4. Daniel T. D. Jones & Andrew N. Dates & Shaun D. Rawson & Maggie M. Burruss & Colin H. Lipper & Stephen C. Blacklow, 2023. "Tethered agonist activated ADGRF1 structure and signalling analysis reveal basis for G protein coupling," Nature Communications, Nature, vol. 14(1), pages 1-13, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Xuan Zhang & Yujing Wang & Shreyas Supekar & Xu Cao & Jingkai Zhou & Jessica Dang & Siqi Chen & Laura Jenkins & Sara Marsango & Xiu Li & Guibing Liu & Graeme Milligan & Mingye Feng & Hao Fan & Weimin , 2023. "Pro-phagocytic function and structural basis of GPR84 signaling," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    2. Na Wang & Xinheng He & Jing Zhao & Hualiang Jiang & Xi Cheng & Yu Xia & H. Eric Xu & Yuanzheng He, 2022. "Structural basis of leukotriene B4 receptor 1 activation," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    3. Jiale Liang & Asuka Inoue & Tatsuya Ikuta & Ruixue Xia & Na Wang & Kouki Kawakami & Zhenmei Xu & Yu Qian & Xinyan Zhu & Anqi Zhang & Changyou Guo & Zhiwei Huang & Yuanzheng He, 2023. "Structural basis of lysophosphatidylserine receptor GPR174 ligand recognition and activation," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    4. Li-Hua Zhao & Jingyu Lin & Su-Yu Ji & X. Edward Zhou & Chunyou Mao & Dan-Dan Shen & Xinheng He & Peng Xiao & Jinpeng Sun & Karsten Melcher & Yan Zhang & Xiao Yu & H. Eric Xu, 2022. "Structure insights into selective coupling of G protein subtypes by a class B G protein-coupled receptor," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    5. Hongmin Cai & Shimeng Guo & Youwei Xu & Jun Sun & Junrui Li & Zhikan Xia & Yi Jiang & Xin Xie & H. Eric Xu, 2024. "Cryo-EM structures of adenosine receptor A3AR bound to selective agonists," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    6. Jia Duan & Dan-Dan Shen & Tingting Zhao & Shimeng Guo & Xinheng He & Wanchao Yin & Peiyu Xu & Yujie Ji & Li-Nan Chen & Jinyu Liu & Huibing Zhang & Qiufeng Liu & Yi Shi & Xi Cheng & Hualiang Jiang & H., 2022. "Molecular basis for allosteric agonism and G protein subtype selectivity of galanin receptors," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    7. Canrong Wu & Youwei Xu & Qian He & Dianrong Li & Jia Duan & Changyao Li & Chongzhao You & Han Chen & Weiliang Fan & Yi Jiang & H. Eric Xu, 2023. "Ligand-induced activation and G protein coupling of prostaglandin F2α receptor," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    8. Chunyou Mao & Mengru Gao & Shao-Kun Zang & Yanqing Zhu & Dan-Dan Shen & Li-Nan Chen & Liu Yang & Zhiwei Wang & Huibing Zhang & Wei-Wei Wang & Qingya Shen & Yanhui Lu & Xin Ma & Yan Zhang, 2023. "Orthosteric and allosteric modulation of human HCAR2 signaling complex," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    9. Yu Qian & Zhengxiong Ma & Zhenmei Xu & Yaning Duan & Yangjie Xiong & Ruixue Xia & Xinyan Zhu & Zongwei Zhang & Xinyu Tian & Han Yin & Jian Liu & Jing Song & Yang Lu & Anqi Zhang & Changyou Guo & Lihua, 2024. "Structural basis of Frizzled 4 in recognition of Dishevelled 2 unveils mechanism of WNT signaling activation," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    10. Tai-Ying Chu & Céline Zheng-Gérard & Kuan-Yeh Huang & Yu-Chi Chang & Ying-Wen Chen & Kuan-Yu I & Yu-Ling Lo & Nien-Yi Chiang & Hsin-Yi Chen & Martin Stacey & Siamon Gordon & Wen-Yi Tseng & Chiao-Yin S, 2022. "GPR97 triggers inflammatory processes in human neutrophils via a macromolecular complex upstream of PAR2 activation," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    11. Shota Suzuki & Kotaro Tanaka & Kouki Nishikawa & Hiroshi Suzuki & Atsunori Oshima & Yoshinori Fujiyoshi, 2023. "Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    12. Daniel T. D. Jones & Andrew N. Dates & Shaun D. Rawson & Maggie M. Burruss & Colin H. Lipper & Stephen C. Blacklow, 2023. "Tethered agonist activated ADGRF1 structure and signalling analysis reveal basis for G protein coupling," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    13. Yujie Ji & Jia Duan & Qingning Yuan & Xinheng He & Gong Yang & Shengnan Zhu & Kai Wu & Wen Hu & Tianyu Gao & Xi Cheng & Hualiang Jiang & H. Eric Xu & Yi Jiang, 2023. "Structural basis of peptide recognition and activation of endothelin receptors," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    14. Chongzhao You & Yumu Zhang & Peiyu Xu & Sijie Huang & Wanchao Yin & H. Eric Xu & Yi Jiang, 2022. "Structural insights into the peptide selectivity and activation of human neuromedin U receptors," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    15. Dohyun Im & Jun-ichi Kishikawa & Yuki Shiimura & Hiromi Hisano & Akane Ito & Yoko Fujita-Fujiharu & Yukihiko Sugita & Takeshi Noda & Takayuki Kato & Hidetsugu Asada & So Iwata, 2023. "Structural insights into the agonists binding and receptor selectivity of human histamine H4 receptor," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    16. Edin Muratspahić & Kristine Deibler & Jianming Han & Nataša Tomašević & Kirtikumar B. Jadhav & Aina-Leonor Olivé-Marti & Nadine Hochrainer & Roland Hellinger & Johannes Koehbach & Jonathan F. Fay & Mo, 2023. "Design and structural validation of peptide–drug conjugate ligands of the kappa-opioid receptor," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
    17. Ye Yuan & Lei Chen & Kexu Song & Miaomiao Cheng & Ling Fang & Lingfei Kong & Lanlan Yu & Ruonan Wang & Zhendong Fu & Minmin Sun & Qian Wang & Chengjun Cui & Haojue Wang & Jiuyang He & Xiaonan Wang & Y, 2024. "Stable peptide-assembled nanozyme mimicking dual antifungal actions," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    18. Ivica Odorčić & Mohamed Belal Hamed & Sam Lismont & Lucía Chávez-Gutiérrez & Rouslan G. Efremov, 2024. "Apo and Aβ46-bound γ-secretase structures provide insights into amyloid-β processing by the APH-1B isoform," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    19. Stella Vitt & Simone Prinz & Martin Eisinger & Ulrich Ermler & Wolfgang Buckel, 2022. "Purification and structural characterization of the Na+-translocating ferredoxin: NAD+ reductase (Rnf) complex of Clostridium tetanomorphum," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    20. Pierre Azoulay & Joshua Krieger & Abhishek Nagaraj, 2024. "Old Moats for New Models: Openness, Control, and Competition in Generative AI," NBER Chapters, in: Entrepreneurship and Innovation Policy and the Economy, volume 4, National Bureau of Economic Research, Inc.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33173-4. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.