Predicting cancer prognosis and drug response from the tumor microbiome
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-022-30512-3
Download full text from publisher
References listed on IDEAS
- Yishai Shimoni, 2018. "Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification," PLOS Computational Biology, Public Library of Science, vol. 14(2), pages 1-15, February.
- Simon, Noah & Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2011. "Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 39(i05).
- Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
- Gregory D. Poore & Evguenia Kopylova & Qiyun Zhu & Carolina Carpenter & Serena Fraraccio & Stephen Wandro & Tomasz Kosciolek & Stefan Janssen & Jessica Metcalf & Se Jin Song & Jad Kanbar & Sandrine Mi, 2020. "RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancer diagnostic approach," Nature, Nature, vol. 579(7800), pages 567-574, March.
- Andrius Vabalas & Emma Gowen & Ellen Poliakoff & Alexander J Casson, 2019. "Machine learning algorithm validation with a limited sample size," PLOS ONE, Public Library of Science, vol. 14(11), pages 1-20, November.
- Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Soave, David & Lawless, Jerald F., 2023. "Regularized regression for two phase failure time studies," Computational Statistics & Data Analysis, Elsevier, vol. 182(C).
- Zemin Zheng & Jie Zhang & Yang Li, 2022. "L 0 -Regularized Learning for High-Dimensional Additive Hazards Regression," INFORMS Journal on Computing, INFORMS, vol. 34(5), pages 2762-2775, September.
- Takumi Saegusa & Tianzhou Ma & Gang Li & Ying Qing Chen & Mei-Ling Ting Lee, 2020. "Variable Selection in Threshold Regression Model with Applications to HIV Drug Adherence Data," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 12(3), pages 376-398, December.
- Lingjing Jiang & Niina Haiminen & Anna‐Paola Carrieri & Shi Huang & Yoshiki Vázquez‐Baeza & Laxmi Parida & Ho‐Cheol Kim & Austin D. Swafford & Rob Knight & Loki Natarajan, 2022. "Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data," Biometrics, The International Biometric Society, vol. 78(3), pages 1155-1167, September.
- Shuang Huang & Chengcheng Hu & Melanie L. Bell & Dean Billheimer & Stefano Guerra & Denise Roe & Monica M. Vasquez & Edward J. Bedrick, 2018. "Regularized continuous‐time Markov Model via elastic net," Biometrics, The International Biometric Society, vol. 74(3), pages 1045-1054, September.
- Liao Zhu, 2021. "The Adaptive Multi-Factor Model and the Financial Market," Papers 2107.14410, arXiv.org, revised Aug 2021.
- Ascarza, & Neslin, & Netzer, & Lemmens, Aurélie & Anderson, Zachery & Fader, Peter S. & Gupta, S. & Hardie, B.G.S. & Libai, Barak & Neal, David & Provost, Foster, 2018. "In pursuit of enhanced customer retention management : Review, key issues, and future directions," Other publications TiSEM 28a90d28-6daf-42f1-bd8e-e, Tilburg University, School of Economics and Management.
- Marton Gosztonyi, 2023. "Comparative Analysis of X-Y-Z Generation Entrepreneurs in a Semi-Peripheral EU Member Country: Insights from Regularized Regression Techniques," European Research Studies Journal, European Research Studies Journal, vol. 0(4), pages 191-217.
- Yoonsuh Jung, 2018. "Multiple predicting K-fold cross-validation for model selection," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 30(1), pages 197-215, January.
- Zhixuan Fu & Chirag R. Parikh & Bingqing Zhou, 2017. "Penalized variable selection in competing risks regression," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 23(3), pages 353-376, July.
- Rafael Blanquero & Emilio Carrizosa & Pepa Ramírez-Cobo & M. Remedios Sillero-Denamiel, 2021. "A cost-sensitive constrained Lasso," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 15(1), pages 121-158, March.
- Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
- Oxana Babecka Kucharcukova & Jan Bruha, 2016. "Nowcasting the Czech Trade Balance," Working Papers 2016/11, Czech National Bank.
- Carstensen, Kai & Heinrich, Markus & Reif, Magnus & Wolters, Maik H., 2020.
"Predicting ordinary and severe recessions with a three-state Markov-switching dynamic factor model,"
International Journal of Forecasting, Elsevier, vol. 36(3), pages 829-850.
- Heinrich, Markus & Carstensen, Kai & Reif, Magnus & Wolters, Maik, 2017. "Predicting Ordinary and Severe Recessions with a Three-State Markov-Switching Dynamic Factor Model. An Application to the German Business Cycle," VfS Annual Conference 2017 (Vienna): Alternative Structures for Money and Banking 168206, Verein für Socialpolitik / German Economic Association.
- Kai Carstensen & Markus Heinrich & Magnus Reif & Maik H. Wolters, 2017. "Predicting Ordinary and Severe Recessions with a Three-State Markov-Switching Dynamic Factor Model. An Application to the German Business Cycle," CESifo Working Paper Series 6457, CESifo.
- Kai Carstensen & Markus Heinrich & Magnus Reif & Maik H. Wolters, 2019. "Predicting Ordinary and Severe Recessions with a Three-State Markov-Switching Dynamic Factor Model," Jena Economics Research Papers 2019-006, Friedrich-Schiller-University Jena.
- Hou-Tai Chang & Ping-Huai Wang & Wei-Fang Chen & Chen-Ju Lin, 2022. "Risk Assessment of Early Lung Cancer with LDCT and Health Examinations," IJERPH, MDPI, vol. 19(8), pages 1-12, April.
- Margherita Giuzio, 2017. "Genetic algorithm versus classical methods in sparse index tracking," Decisions in Economics and Finance, Springer;Associazione per la Matematica, vol. 40(1), pages 243-256, November.
- Nicolaj N. Mühlbach, 2020. "Tree-based Synthetic Control Methods: Consequences of moving the US Embassy," CREATES Research Papers 2020-04, Department of Economics and Business Economics, Aarhus University.
- Wang, Qiao & Zhou, Wei & Cheng, Yonggang & Ma, Gang & Chang, Xiaolin & Miao, Yu & Chen, E, 2018. "Regularized moving least-square method and regularized improved interpolating moving least-square method with nonsingular moment matrices," Applied Mathematics and Computation, Elsevier, vol. 325(C), pages 120-145.
- Dmitriy Drusvyatskiy & Adrian S. Lewis, 2018. "Error Bounds, Quadratic Growth, and Linear Convergence of Proximal Methods," Mathematics of Operations Research, INFORMS, vol. 43(3), pages 919-948, August.
- Mkhadri, Abdallah & Ouhourane, Mohamed, 2013. "An extended variable inclusion and shrinkage algorithm for correlated variables," Computational Statistics & Data Analysis, Elsevier, vol. 57(1), pages 631-644.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30512-3. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.