Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF
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DOI: 10.1038/s41467-022-29934-w
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- Carrie Bernecky & Franz Herzog & Wolfgang Baumeister & Jürgen M. Plitzko & Patrick Cramer, 2016. "Structure of transcribing mammalian RNA polymerase II," Nature, Nature, vol. 529(7587), pages 551-554, January.
- Patrick Cramer, 2019. "Organization and regulation of gene transcription," Nature, Nature, vol. 573(7772), pages 45-54, September.
- Wenbo Li & Dimple Notani & Qi Ma & Bogdan Tanasa & Esperanza Nunez & Aaron Yun Chen & Daria Merkurjev & Jie Zhang & Kenneth Ohgi & Xiaoyuan Song & Soohwan Oh & Hong-Sook Kim & Christopher K. Glass & M, 2013. "Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation," Nature, Nature, vol. 498(7455), pages 516-520, June.
- Seychelle M. Vos & Lucas Farnung & Henning Urlaub & Patrick Cramer, 2018. "Structure of paused transcription complex Pol II–DSIF–NELF," Nature, Nature, vol. 560(7720), pages 601-606, August.
- Tae-Kyung Kim & Martin Hemberg & Jesse M. Gray & Allen M. Costa & Daniel M. Bear & Jing Wu & David A. Harmin & Mike Laptewicz & Kellie Barbara-Haley & Scott Kuersten & Eirene Markenscoff-Papadimitriou, 2010. "Widespread transcription at neuronal activity-regulated enhancers," Nature, Nature, vol. 465(7295), pages 182-187, May.
- Robin Andersson & Claudia Gebhard & Irene Miguel-Escalada & Ilka Hoof & Jette Bornholdt & Mette Boyd & Yun Chen & Xiaobei Zhao & Christian Schmidl & Takahiro Suzuki & Evgenia Ntini & Erik Arner & Eivi, 2014. "An atlas of active enhancers across human cell types and tissues," Nature, Nature, vol. 507(7493), pages 455-461, March.
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