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ADAP1 promotes latent HIV-1 reactivation by selectively tuning KRAS–ERK–AP-1 T cell signaling-transcriptional axis

Author

Listed:
  • Nora-Guadalupe P. Ramirez

    (The University of Texas Southwestern Medical Center)

  • Jeon Lee

    (The University of Texas Southwestern Medical Center)

  • Yue Zheng

    (University of Utah School of Medicine)

  • Lianbo Li

    (The University of Texas Southwestern Medical Center
    The University of Texas Southwestern Medical Center)

  • Bryce Dennis

    (The University of Texas Southwestern Medical Center
    The University of Texas Southwestern Medical Center)

  • Didi Chen

    (The University of Texas Southwestern Medical Center)

  • Ashwini Challa

    (The University of Texas Southwestern Medical Center)

  • Vicente Planelles

    (University of Utah School of Medicine)

  • Kenneth D. Westover

    (The University of Texas Southwestern Medical Center
    The University of Texas Southwestern Medical Center)

  • Neal M. Alto

    (The University of Texas Southwestern Medical Center)

  • Iván D’Orso

    (The University of Texas Southwestern Medical Center)

Abstract

Immune stimulation fuels cell signaling-transcriptional programs inducing biological responses to eliminate virus-infected cells. Yet, retroviruses that integrate into host cell chromatin, such as HIV-1, co-opt these programs to switch between latent and reactivated states; however, the regulatory mechanisms are still unfolding. Here, we implemented a functional screen leveraging HIV-1’s dependence on CD4+ T cell signaling-transcriptional programs and discovered ADAP1 is an undescribed modulator of HIV-1 proviral fate. Specifically, we report ADAP1 (ArfGAP with dual PH domain-containing protein 1), a previously thought neuronal-restricted factor, is an amplifier of select T cell signaling programs. Using complementary biochemical and cellular assays, we demonstrate ADAP1 inducibly interacts with the immune signalosome to directly stimulate KRAS GTPase activity thereby augmenting T cell signaling through targeted activation of the ERK–AP-1 axis. Single cell transcriptomics analysis revealed loss of ADAP1 function blunts gene programs upon T cell stimulation consequently dampening latent HIV-1 reactivation. Our combined experimental approach defines ADAP1 as an unexpected tuner of T cell programs facilitating HIV-1 latency escape.

Suggested Citation

  • Nora-Guadalupe P. Ramirez & Jeon Lee & Yue Zheng & Lianbo Li & Bryce Dennis & Didi Chen & Ashwini Challa & Vicente Planelles & Kenneth D. Westover & Neal M. Alto & Iván D’Orso, 2022. "ADAP1 promotes latent HIV-1 reactivation by selectively tuning KRAS–ERK–AP-1 T cell signaling-transcriptional axis," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28772-0
    DOI: 10.1038/s41467-022-28772-0
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    1. John W. Schoggins & Sam J. Wilson & Maryline Panis & Mary Y. Murphy & Christopher T. Jones & Paul Bieniasz & Charles M. Rice, 2011. "A diverse range of gene products are effectors of the type I interferon antiviral response," Nature, Nature, vol. 472(7344), pages 481-485, April.
    2. Zuoming Sun & Christopher W. Arendt & Wilfried Ellmeier & Edward M. Schaeffer & Mary Jean Sunshine & Leena Gandhi & Justin Annes & Daniela Petrzilka & Abraham Kupfer & Pamela L. Schwartzberg & Dan R. , 2000. "PKC-θ is required for TCR-induced NF-κB activation in mature but not immature T lymphocytes," Nature, Nature, vol. 404(6776), pages 402-407, March.
    3. Yingyao Zhou & Bin Zhou & Lars Pache & Max Chang & Alireza Hadj Khodabakhshi & Olga Tanaseichuk & Christopher Benner & Sumit K. Chanda, 2019. "Metascape provides a biologist-oriented resource for the analysis of systems-level datasets," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
    4. Mary E. Dickinson & Ann M. Flenniken & Xiao Ji & Lydia Teboul & Michael D. Wong & Jacqueline K. White & Terrence F. Meehan & Wolfgang J. Weninger & Henrik Westerberg & Hibret Adissu & Candice N. Baker, 2016. "High-throughput discovery of novel developmental phenotypes," Nature, Nature, vol. 537(7621), pages 508-514, September.
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