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SARS-CoV-2: An Overview of Virus Genetics, Transmission, and Immunopathogenesis

Author

Listed:
  • Mohamed A. Farrag

    (Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia)

  • Haitham M. Amer

    (Department of Virology, Faculty of Veterinary Medicine, Cairo University, Giza 12211, Egypt)

  • Rauf Bhat

    (Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia)

  • Maaweya E. Hamed

    (Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia)

  • Ibrahim M. Aziz

    (Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia)

  • Ayman Mubarak

    (Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia)

  • Turki M Dawoud

    (Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia)

  • Sami G Almalki

    (Department of Medical Laboratory Sciences, College of Applied Medical Sciences, Majmaah University, Majmaah 11952, Saudi Arabia)

  • Fayez Alghofaili

    (Department of Medical Laboratory Sciences, College of Applied Medical Sciences, Majmaah University, Majmaah 11952, Saudi Arabia)

  • Ahmad K. Alnemare

    (Otolaryngology Department, College of Medicine, Majmaah University, Majmaah 11952, Saudi Arabia)

  • Raid Saleem Al-Baradi

    (Department of Medical Laboratory Sciences, College of Applied Medical Sciences, Majmaah University, Majmaah 11952, Saudi Arabia)

  • Bandar Alosaimi

    (Research Center, King Fahad Medical City, Riyadh 11525, Saudi Arabia)

  • Wael Alturaiki

    (Department of Medical Laboratory Sciences, College of Applied Medical Sciences, Majmaah University, Majmaah 11952, Saudi Arabia)

Abstract

The human population is currently facing the third and possibly the worst pandemic caused by human coronaviruses (CoVs). The virus was first reported in Wuhan, China, on 31 December 2019 and spread within a short time to almost all countries of the world. Genome analysis of the early virus isolates has revealed high similarity with SARS-CoV and hence the new virus was officially named SARS-CoV-2. Since CoVs have the largest genome among all RNA viruses, they can adapt to many point mutation and recombination events; particularly in the spike gene, which enable these viruses to rapidly change and evolve in nature. CoVs are known to cross the species boundaries by using different cellular receptors. Both animal reservoir and intermediate host for SARS-CoV-2 are still unresolved and necessitate further investigation. In the current review, different aspects of SARS-CoV-2 biology and pathogenicity are discussed, including virus genetics and evolution, spike protein and its role in evolution and adaptation to novel hosts, and virus transmission and persistence in nature. In addition, the immune response developed during SARS-CoV-2 infection is demonstrated with special reference to the interplay between immune cells and their role in disease progression. We believe that the SARS-CoV-2 outbreak will not be the last and spillover of CoVs from bats will continue. Therefore, establishing intervention approaches to reduce the likelihood of future CoVs spillover from natural reservoirs is a priority.

Suggested Citation

  • Mohamed A. Farrag & Haitham M. Amer & Rauf Bhat & Maaweya E. Hamed & Ibrahim M. Aziz & Ayman Mubarak & Turki M Dawoud & Sami G Almalki & Fayez Alghofaili & Ahmad K. Alnemare & Raid Saleem Al-Baradi & , 2021. "SARS-CoV-2: An Overview of Virus Genetics, Transmission, and Immunopathogenesis," IJERPH, MDPI, vol. 18(12), pages 1-14, June.
    • Handle: RePEc:gam:jijerp:v:18:y:2021:i:12:p:6312-:d:572931
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    as
    1. V. Stalin Raj & Huihui Mou & Saskia L. Smits & Dick H. W. Dekkers & Marcel A. Müller & Ronald Dijkman & Doreen Muth & Jeroen A. A. Demmers & Ali Zaki & Ron A. M. Fouchier & Volker Thiel & Christian Dr, 2013. "Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC," Nature, Nature, vol. 495(7440), pages 251-254, March.
    2. Luca Fiorillo & Gabriele Cervino & Marco Matarese & Cesare D’Amico & Giovanni Surace & Valeria Paduano & Maria Teresa Fiorillo & Antonio Moschella & Alessia La Bruna & Giovanni Luca Romano & Riccardo , 2020. "COVID-19 Surface Persistence: A Recent Data Summary and Its Importance for Medical and Dental Settings," IJERPH, MDPI, vol. 17(9), pages 1-10, April.
    3. Jian Shang & Gang Ye & Ke Shi & Yushun Wan & Chuming Luo & Hideki Aihara & Qibin Geng & Ashley Auerbach & Fang Li, 2020. "Structural basis of receptor recognition by SARS-CoV-2," Nature, Nature, vol. 581(7807), pages 221-224, May.
    4. Wenhui Li & Michael J. Moore & Natalya Vasilieva & Jianhua Sui & Swee Kee Wong & Michael A. Berne & Mohan Somasundaran & John L. Sullivan & Katherine Luzuriaga & Thomas C. Greenough & Hyeryun Choe & M, 2003. "Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus," Nature, Nature, vol. 426(6965), pages 450-454, November.
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