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Segregation Distortion for Male Parents in High Density Genetic Maps from Reciprocal Crosses between Two Self-Incompatible Cultivars Confirms a Gametophytic System for Self-Incompatibility in Citrus

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  • Patrick Ollitrault

    (CIRAD, UMR AGAP, F-20230 San Giuliano, France
    UMR AGAP, Université Montpellier, CIRAD, INRAE, Institut Agro, 34060 Montpellier, France)

  • Dalel Ahmed

    (UMR AGAP, Université Montpellier, CIRAD, INRAE, Institut Agro, 20230 San Giuliano, France)

  • Gilles Costantino

    (UMR AGAP, Université Montpellier, CIRAD, INRAE, Institut Agro, 20230 San Giuliano, France)

  • Jean-Charles Evrard

    (CIRAD, UMR AGAP, F-20230 San Giuliano, France
    UMR AGAP, Université Montpellier, CIRAD, INRAE, Institut Agro, 34060 Montpellier, France)

  • Celine Cardi

    (CIRAD, UMR AGAP, F-20230 San Giuliano, France
    UMR AGAP, Université Montpellier, CIRAD, INRAE, Institut Agro, 34060 Montpellier, France)

  • Pierre Mournet

    (CIRAD, UMR AGAP, F-20230 San Giuliano, France
    UMR AGAP, Université Montpellier, CIRAD, INRAE, Institut Agro, 34060 Montpellier, France)

  • Aude Perdereau

    (Genoscope, Institut de Biologie François-Jacob, Commissariat à l’Energie Atomique (CEA), Université Paris-Saclay, 91000 Evry, France)

  • Yann Froelicher

    (CIRAD, UMR AGAP, F-20230 San Giuliano, France
    UMR AGAP, Université Montpellier, CIRAD, INRAE, Institut Agro, 34060 Montpellier, France)

Abstract

Self-incompatibility is an important evolutionary feature in angiosperms and has major implications for breeding strategies in horticultural crops. In citrus, when coupled with parthenocarpy, it enables the production of seedless fruits in a mono-varietal orchard. A gametophytic incompatibility system with one S locus was proposed for citrus, but its molecular mechanisms remain the subject of debate. The objective of this work was to locate the S locus by the analyzing segregation distortion in reciprocal crosses of two self-incompatible citrus sharing one self-incompatible allele and to compare this location with previously published models. High density genetic maps of ‘Fortune’ mandarin and ‘Ellendale tangor’ with, respectively, 2164 SNP and 1467 SNP markers, were constructed using genotyping by sequencing data. They are highly syntenic and collinear with the clementine genome. Complete rejection of one allele was only observed in male segregation in the two parents and in only one genomic area, at the beginning of chromosome 7 of the clementine reference genome. Haplotype data in the area surrounding the theoretical S locus were in agreement with previously proposed S genotypes. Overall, our results are in full agreement with the recently proposed gametophytic S-RNase system with the S locus at the beginning of chromosome 7 of the clementine reference genome.

Suggested Citation

  • Patrick Ollitrault & Dalel Ahmed & Gilles Costantino & Jean-Charles Evrard & Celine Cardi & Pierre Mournet & Aude Perdereau & Yann Froelicher, 2021. "Segregation Distortion for Male Parents in High Density Genetic Maps from Reciprocal Crosses between Two Self-Incompatible Cultivars Confirms a Gametophytic System for Self-Incompatibility in Citrus," Agriculture, MDPI, vol. 11(5), pages 1-21, April.
    • Handle: RePEc:gam:jagris:v:11:y:2021:i:5:p:379-:d:541700
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    References listed on IDEAS

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    1. John D. Storey, 2002. "A direct approach to false discovery rates," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(3), pages 479-498, August.
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    1. Rafael Montalt & Laura Prósper & María Carmen Vives & Luis Navarro & Patrick Ollitrault & Pablo Aleza, 2022. "Breakdown of Self-Incompatibility in Citrus by Temperature Stress, Bud Pollination and Polyploidization," Agriculture, MDPI, vol. 12(2), pages 1-19, February.

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