IDEAS home Printed from https://ideas.repec.org/a/eee/phsmap/v403y2014icp276-283.html
   My bibliography  Save this article

Evolution based on chromosome affinity from a network perspective

Author

Listed:
  • Monteiro, R.L.S.
  • Fontoura, J.R.A.
  • Carneiro, T.K.G.
  • Moret, M.A.
  • Pereira, H.B.B.

Abstract

Recent studies have focused on models to simulate the complex phenomenon of evolution of species. Several studies have been performed with theoretical models based on Darwin’s theories to associate them with the actual evolution of species. However, none of the existing models include the affinity between individuals using network properties. In this paper, we present a new model based on the concept of affinity. The model is used to simulate the evolution of species in an ecosystem composed of individuals and their relationships. We propose an evolutive algorithm that incorporates the degree centrality and efficiency network properties to perform the crossover process and to obtain the network topology objective, respectively. Using a real network as a starting point, we simulate its evolution and compare its results with the results of 5788 computer-generated networks.

Suggested Citation

  • Monteiro, R.L.S. & Fontoura, J.R.A. & Carneiro, T.K.G. & Moret, M.A. & Pereira, H.B.B., 2014. "Evolution based on chromosome affinity from a network perspective," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 403(C), pages 276-283.
  • Handle: RePEc:eee:phsmap:v:403:y:2014:i:c:p:276-283
    DOI: 10.1016/j.physa.2014.02.019
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0378437114001204
    Download Restriction: Full text for ScienceDirect subscribers only. Journal offers the option of making the article available online on Science direct for a fee of $3,000

    File URL: https://libkey.io/10.1016/j.physa.2014.02.019?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. S. M.G. Caldeira & T. C. Petit Lobão & R. F.S. Andrade & A. Neme & J. G.V. Miranda, 2006. "The network of concepts in written texts," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 49(4), pages 523-529, February.
    2. Hisashi Ohtsuki & Christoph Hauert & Erez Lieberman & Martin A. Nowak, 2006. "A simple rule for the evolution of cooperation on graphs and social networks," Nature, Nature, vol. 441(7092), pages 502-505, May.
    3. Phillips, J.C., 2012. "Frequency–rank correlations of rhodopsin mutations with tuned hydropathic roughness based on self-organized criticality," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(22), pages 5473-5478.
    4. H. Jeong & B. Tombor & R. Albert & Z. N. Oltvai & A.-L. Barabási, 2000. "The large-scale organization of metabolic networks," Nature, Nature, vol. 407(6804), pages 651-654, October.
    5. Pereira, H.B.B. & Fadigas, I.S. & Senna, V. & Moret, M.A., 2011. "Semantic networks based on titles of scientific papers," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 390(6), pages 1192-1197.
    6. Phillips, J.C., 2013. "Self-organized criticality and color vision: A guide to water–protein landscape evolution," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(3), pages 468-473.
    7. Moret, M.A. & Pereira, H.B.B. & Monteiro, S.L. & Galeão, A.C., 2012. "Evolution of species from Darwin theory: A simple model," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(8), pages 2803-2806.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Wu, Zhenyu & Zou, Ming, 2014. "Modeling social tagging using latent interaction potential," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 413(C), pages 125-133.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Jorge Peña & Yannick Rochat, 2012. "Bipartite Graphs as Models of Population Structures in Evolutionary Multiplayer Games," PLOS ONE, Public Library of Science, vol. 7(9), pages 1-13, September.
    2. Davi Alves Oliveira & Hernane Borges de Barros Pereira, 2024. "Modeling texts with networks: comparing five approaches to sentence representation," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 97(6), pages 1-12, June.
    3. Wang, Junjie & Zhou, Shuigeng & Guan, Jihong, 2011. "Characteristics of real futures trading networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 390(2), pages 398-409.
    4. Sakiyama, Tomoko, 2021. "A power law network in an evolutionary hawk–dove game," Chaos, Solitons & Fractals, Elsevier, vol. 146(C).
    5. Boyu Zhang & Cong Li & Yi Tao, 2016. "Evolutionary Stability and the Evolution of Cooperation on Heterogeneous Graphs," Dynamic Games and Applications, Springer, vol. 6(4), pages 567-579, December.
    6. Jin Wang & Bo Huang & Xuefeng Xia & Zhirong Sun, 2006. "Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle," PLOS Computational Biology, Public Library of Science, vol. 2(11), pages 1-10, November.
    7. Zhou, Wei-Xing & Jiang, Zhi-Qiang & Sornette, Didier, 2007. "Exploring self-similarity of complex cellular networks: The edge-covering method with simulated annealing and log-periodic sampling," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 375(2), pages 741-752.
    8. Konno, Tomohiko, 2013. "An imperfect competition on scale-free networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 392(21), pages 5453-5460.
    9. Trenchard, Hugh, 2015. "The peloton superorganism and protocooperative behavior," Applied Mathematics and Computation, Elsevier, vol. 270(C), pages 179-192.
    10. R. Bentley & Michael O’Brien & Paul Ormerod, 2011. "Quality versus mere popularity: a conceptual map for understanding human behavior," Mind & Society: Cognitive Studies in Economics and Social Sciences, Springer;Fondazione Rosselli, vol. 10(2), pages 181-191, December.
    11. Sgrignoli, P. & Agliari, E. & Burioni, R. & Schianchi, A., 2015. "Instability and network effects in innovative markets," Mathematics and Computers in Simulation (MATCOM), Elsevier, vol. 108(C), pages 260-271.
    12. Long Ma & Xiao Han & Zhesi Shen & Wen-Xu Wang & Zengru Di, 2015. "Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing," PLOS ONE, Public Library of Science, vol. 10(11), pages 1-12, November.
    13. Peng Liu & Haoxiang Xia, 2015. "Structure and evolution of co-authorship network in an interdisciplinary research field," Scientometrics, Springer;Akadémiai Kiadó, vol. 103(1), pages 101-134, April.
    14. Christian F A Negre & Hayato Ushijima-Mwesigwa & Susan M Mniszewski, 2020. "Detecting multiple communities using quantum annealing on the D-Wave system," PLOS ONE, Public Library of Science, vol. 15(2), pages 1-14, February.
    15. Aslihan Akdeniz & Matthijs van Veelen, 2019. "The cancellation effect at the group level," Tinbergen Institute Discussion Papers 19-073/I, Tinbergen Institute.
    16. Michael Foley & Rory Smead & Patrick Forber & Christoph Riedl, 2021. "Avoiding the bullies: The resilience of cooperation among unequals," PLOS Computational Biology, Public Library of Science, vol. 17(4), pages 1-18, April.
    17. Biggiero, Lucio & Angelini, Pier Paolo, 2015. "Hunting scale-free properties in R&D collaboration networks: Self-organization, power-law and policy issues in the European aerospace research area," Technological Forecasting and Social Change, Elsevier, vol. 94(C), pages 21-43.
    18. Zhao, Zhengwu & Zhang, Chunyan, 2023. "The mechanisms of labor division from the perspective of task urgency and game theory," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 630(C).
    19. Tamás Nepusz & Tamás Vicsek, 2013. "Hierarchical Self-Organization of Non-Cooperating Individuals," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-9, December.
    20. Lessard, Sabin & Lahaie, Philippe, 2009. "Fixation probability with multiple alleles and projected average allelic effect on selection," Theoretical Population Biology, Elsevier, vol. 75(4), pages 266-277.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:phsmap:v:403:y:2014:i:c:p:276-283. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/physica-a-statistical-mechpplications/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.