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Principal component analysis and clustering on manifolds

Author

Listed:
  • Mardia, Kanti V.
  • Wiechers, Henrik
  • Eltzner, Benjamin
  • Huckemann, Stephan F.

Abstract

Big data, high dimensional data, sparse data, large scale data, and imaging data are all becoming new frontiers of statistics. Changing technologies have created this flood and have led to a real hunger for new modeling strategies and data analysis by scientists. In many cases data are not Euclidean; for example, in molecular biology, the data sit on manifolds. Even in a simple non-Euclidean manifold (circle), to summarize angles by the arithmetic average cannot make sense and so more care is needed. Thus non-Euclidean settings throw up many major challenges, both mathematical and statistical. This paper will focus on the PCA and clustering methods for some manifolds. Of course, the PCA and clustering methods in multivariate analysis are one of the core topics.

Suggested Citation

  • Mardia, Kanti V. & Wiechers, Henrik & Eltzner, Benjamin & Huckemann, Stephan F., 2022. "Principal component analysis and clustering on manifolds," Journal of Multivariate Analysis, Elsevier, vol. 188(C).
  • Handle: RePEc:eee:jmvana:v:188:y:2022:i:c:s0047259x21001408
    DOI: 10.1016/j.jmva.2021.104862
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    References listed on IDEAS

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    1. Michail Tsagris & Christina Beneki & Hossein Hassani, 2014. "On the Folded Normal Distribution," Mathematics, MDPI, vol. 2(1), pages 1-17, February.
    2. Stephan F. Huckemann, 2021. "Comments on: Recent advances in directional statistics," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 30(1), pages 71-75, March.
    3. J. Gower, 1975. "Generalized procrustes analysis," Psychometrika, Springer;The Psychometric Society, vol. 40(1), pages 33-51, March.
    4. Simon P. Preston & Andrew T. A. Wood, 2010. "Two‐Sample Bootstrap Hypothesis Tests for Three‐Dimensional Labelled Landmark Data," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 37(4), pages 568-587, December.
    5. Jes Frellsen & Ida Moltke & Martin Thiim & Kanti V Mardia & Jesper Ferkinghoff-Borg & Thomas Hamelryck, 2009. "A Probabilistic Model of RNA Conformational Space," PLOS Computational Biology, Public Library of Science, vol. 5(6), pages 1-11, June.
    6. Arthur Pewsey & Eduardo García-Portugués, 2021. "Rejoinder on: Recent advances in directional statistics," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 30(1), pages 76-82, March.
    7. Zhigang Yao & Zhenyue Zhang, 2020. "Principal Boundary on Riemannian Manifolds," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 115(531), pages 1435-1448, July.
    8. Sungkyu Jung & Ian L. Dryden & J. S. Marron, 2012. "Analysis of principal nested spheres," Biometrika, Biometrika Trust, vol. 99(3), pages 551-568.
    9. Arthur Pewsey & Eduardo García-Portugués, 2021. "Recent advances in directional statistics," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 30(1), pages 1-58, March.
    10. Kanti V. Mardia, 2013. "Statistical approaches to three key challenges in protein structural bioinformatics," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 62(3), pages 487-514, May.
    11. Kanti V. Mardia, 2021. "Comments on: Recent advances in directional statistics," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 30(1), pages 59-63, March.
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