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EcoNet: A new software for ecological modeling, simulation and network analysis

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  • Kazancı, Caner

Abstract

We present EcoNet, a simulation and analysis software for ecological systems. EcoNet integrates dynamic simulation capability with steady-state network analysis. It features a simple and flexible interface, offering a gentle learning curve for the novice modeler. EcoNet contains sophisticated numerical equation solving routines, which require very few user choices, bringing the thought process and simulation results closer. Features like automatic diagram creation, capability to model large systems with thousands of stocks and flows, stochastic simulation options, and a web interface that requires no installation make EcoNet a welcome addition to the ecological modeling world.

Suggested Citation

  • Kazancı, Caner, 2007. "EcoNet: A new software for ecological modeling, simulation and network analysis," Ecological Modelling, Elsevier, vol. 208(1), pages 3-8.
    • Handle: RePEc:eee:ecomod:v:208:y:2007:i:1:p:3-8
    DOI: 10.1016/j.ecolmodel.2007.04.031
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    References listed on IDEAS

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    1. Borrett, Stuart R. & Osidele, Olufemi O., 2007. "Environ indicator sensitivity to flux uncertainty in a phosphorus model of Lake Sidney Lanier, USA," Ecological Modelling, Elsevier, vol. 200(3), pages 371-383.
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    1. Fath, Brian D. & Scharler, Ursula M. & Baird, Dan, 2013. "Dependence of network metrics on model aggregation and throughflow calculations: Demonstration using the Sylt–Rømø Bight Ecosystem," Ecological Modelling, Elsevier, vol. 252(C), pages 214-219.
    2. Tollner, E.W. & Schramski, J.R. & Kazanci, C. & Patten, B.C., 2009. "Implications of network particle tracking (NPT) for ecological model interpretation," Ecological Modelling, Elsevier, vol. 220(16), pages 1904-1912.
    3. Buzhdygan, Oksana Y. & Rudenko, Svitlana S. & Kazanci, Caner & Patten, Bernard C., 2016. "Effect of invasive black locust (Robinia pseudoacacia L.) on nitrogen cycle in floodplain ecosystem," Ecological Modelling, Elsevier, vol. 319(C), pages 170-177.
    4. Zavalishin, Nikolay N., 2008. "Dynamic compartment approach for modelling regimes of carbon cycle functioning in bog ecosystems," Ecological Modelling, Elsevier, vol. 213(1), pages 16-32.
    5. Kazanci, C. & Matamba, L. & Tollner, E.W., 2009. "Cycling in ecosystems: An individual based approach," Ecological Modelling, Elsevier, vol. 220(21), pages 2908-2914.
    6. Tollner, E.W. & Kazanci, C. & Schramski, J.R. & Patten, B.C., 2009. "Control system approaches to ecological systems analysis: Invariants and frequency response," Ecological Modelling, Elsevier, vol. 220(22), pages 3233-3240.
    7. Kazanci, Caner & Ma, Qianqian & Basheer, Aladeen Al & Azizi, Asma, 2023. "Resilience, indirect effects and cycling in ecological networks," Ecological Modelling, Elsevier, vol. 481(C).
    8. Borrett, S.R. & Freeze, M.A. & Salas, A.K., 2011. "Equivalence of the realized input and output oriented indirect effects metrics in Ecological Network Analysis," Ecological Modelling, Elsevier, vol. 222(13), pages 2142-2148.
    9. Borrett, Stuart R. & Sheble, Laura & Moody, James & Anway, Evan C., 2018. "Bibliometric review of ecological network analysis: 2010–2016," Ecological Modelling, Elsevier, vol. 382(C), pages 63-82.
    10. Matamba, L. & Kazanci, C. & Schramski, J.R. & Blessing, M. & Alexander, P. & Patten, B.C., 2009. "Throughflow analysis: A stochastic approach," Ecological Modelling, Elsevier, vol. 220(22), pages 3174-3181.
    11. Jørgensen, S.E. & Nielsen, S.N., 2015. "Hierarchical networks," Ecological Modelling, Elsevier, vol. 295(C), pages 59-65.
    12. Patten, Bernard C., 2015. "Link tracking: Quantifying network flows from qualitative node–link digraphs," Ecological Modelling, Elsevier, vol. 295(C), pages 47-58.
    13. Varga, M. & Csukas, B., 2017. "Generation of extensible ecosystem models from a network structure and from locally executable programs," Ecological Modelling, Elsevier, vol. 364(C), pages 25-41.
    14. J. Garcia-Algarra & J. M. Pastor & M. L. Mouronte & J. Galeano, 2018. "A Structural Approach to Disentangle the Visualization of Bipartite Biological Networks," Complexity, Hindawi, vol. 2018, pages 1-11, February.
    15. Ma, Q. & Kazanci, C., 2013. "Analysis of indirect effects within ecosystem models using pathway-based methodology," Ecological Modelling, Elsevier, vol. 252(C), pages 238-245.
    16. Chen, Shaoqing & Chen, Bin & Fath, Brian D., 2015. "Assessing the cumulative environmental impact of hydropower construction on river systems based on energy network model," Renewable and Sustainable Energy Reviews, Elsevier, vol. 42(C), pages 78-92.
    17. Kazanci, C. & Ma, Q., 2012. "Extending ecological network analysis measures to dynamic ecosystem models," Ecological Modelling, Elsevier, vol. 242(C), pages 180-188.
    18. Buzhdygan, Oksana Y. & Patten, Bernard C. & Kazanci, Caner & Ma, Qianqian & Rudenko, Svitlana S., 2012. "Dynamical and system-wide properties of linear flow-quantified food webs," Ecological Modelling, Elsevier, vol. 245(C), pages 176-184.

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