IDEAS home Printed from https://ideas.repec.org/a/bpj/ijbist/v5y2009i1n5.html
   My bibliography  Save this article

Estimating Complex Multi-State Misclassification Rates for Biopsy-Measured Liver Fibrosis in Patients with Hepatitis C

Author

Listed:
  • Bacchetti Peter

    (University of California, San Francisco)

  • Boylan Ross

    (University of California, San Francisco)

Abstract

For both clinical and research purposes, biopsies are used to classify liver damage known as fibrosis on an ordinal multi-state scale ranging from no damage to cirrhosis. Misclassification can arise from reading error (misreading of a specimen) or sampling error (the specimen does not accurately represent the liver). Studies of biopsy accuracy have not attempted to synthesize these two sources of error or to estimate actual misclassification rates from either source. Using data from two studies of reading error and two of sampling error, we find surprisingly large possible misclassification rates, including a greater than 50% chance of misclassification for one intermediate stage of fibrosis. We find that some readers tend to misclassify consistently low or consistently high, and some specimens tend to be misclassified low while others tend to be misclassified high. Non-invasive measures of liver fibrosis have generally been evaluated by comparison to simultaneous biopsy results, but biopsy appears to be too unreliable to be considered a gold standard. Non-invasive measures may therefore be more useful than such comparisons suggest. Both stochastic uncertainty and uncertainty about our model assumptions appear to be substantial. Improved studies of biopsy accuracy would include large numbers of both readers and specimens, greater effort to reduce or eliminate reading error in studies of sampling error, and careful estimation of misclassification rates rather than less useful quantities such as kappa statistics.

Suggested Citation

  • Bacchetti Peter & Boylan Ross, 2009. "Estimating Complex Multi-State Misclassification Rates for Biopsy-Measured Liver Fibrosis in Patients with Hepatitis C," The International Journal of Biostatistics, De Gruyter, vol. 5(1), pages 1-27, January.
  • Handle: RePEc:bpj:ijbist:v:5:y:2009:i:1:n:5
    DOI: 10.2202/1557-4679.1139
    as

    Download full text from publisher

    File URL: https://doi.org/10.2202/1557-4679.1139
    Download Restriction: For access to full text, subscription to the journal or payment for the individual article is required.

    File URL: https://libkey.io/10.2202/1557-4679.1139?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Andrew J. Vickers & Elena B. Elkin, 2006. "Decision Curve Analysis: A Novel Method for Evaluating Prediction Models," Medical Decision Making, , vol. 26(6), pages 565-574, November.
    2. Paul S. Albert & Lori E. Dodd, 2004. "A Cautionary Note on the Robustness of Latent Class Models for Estimating Diagnostic Error without a Gold Standard," Biometrics, The International Biometric Society, vol. 60(2), pages 427-435, June.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Pablo Mart�nez-Camblor & Jacobo de U�a-�lvarez & Carmen D�az Corte, 2015. "Expanded renal transplantation: a competing risk model approach," Journal of Applied Statistics, Taylor & Francis Journals, vol. 42(12), pages 2539-2553, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Ja Hyeon Ku & Myong Kim & Seok-Soo Byun & Hyeon Jeong & Cheol Kwak & Hyeon Hoe Kim & Sang Eun Lee, 2015. "External Validation of Models for Prediction of Lymph Node Metastasis in Urothelial Carcinoma of the Bladder," PLOS ONE, Public Library of Science, vol. 10(10), pages 1-10, October.
    2. Paul S. Albert, 2007. "Random Effects Modeling Approaches for Estimating ROC Curves from Repeated Ordinal Tests without a Gold Standard," Biometrics, The International Biometric Society, vol. 63(2), pages 593-602, June.
    3. Donal O'Neill & Olive Sweetman, 2013. "Estimating Obesity Rates in Europe in the Presence of Self-Reporting Errors," Economics Department Working Paper Series n236-13.pdf, Department of Economics, National University of Ireland - Maynooth.
    4. Lin Lu & Laurent Dercle & Binsheng Zhao & Lawrence H. Schwartz, 2021. "Deep learning for the prediction of early on-treatment response in metastatic colorectal cancer from serial medical imaging," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    5. Yiwang Zhou & Peter X.K. Song & Haoda Fu, 2021. "Net benefit index: Assessing the influence of a biomarker for individualized treatment rules," Biometrics, The International Biometric Society, vol. 77(4), pages 1254-1264, December.
    6. Konstantina Chalkou & Andrew J. Vickers & Fabio Pellegrini & Andrea Manca & Georgia Salanti, 2023. "Decision Curve Analysis for Personalized Treatment Choice between Multiple Options," Medical Decision Making, , vol. 43(3), pages 337-349, April.
    7. Dexin Chen & Meiting Fu & Liangjie Chi & Liyan Lin & Jiaxin Cheng & Weisong Xue & Chenyan Long & Wei Jiang & Xiaoyu Dong & Jian Sui & Dajia Lin & Jianping Lu & Shuangmu Zhuo & Side Liu & Guoxin Li & G, 2022. "Prognostic and predictive value of a pathomics signature in gastric cancer," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    8. Jing Sun & Yue Liu & Jianhui Zhao & Bin Lu & Siyun Zhou & Wei Lu & Jingsun Wei & Yeting Hu & Xiangxing Kong & Junshun Gao & Hong Guan & Junli Gao & Qian Xiao & Xue Li, 2024. "Plasma proteomic and polygenic profiling improve risk stratification and personalized screening for colorectal cancer," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    9. O’Neill, Donal, 2015. "Measuring obesity in the absence of a gold standard," Economics & Human Biology, Elsevier, vol. 17(C), pages 116-128.
    10. Anirudh Tomer & Daan Nieboer & Monique J. Roobol & Ewout W. Steyerberg & Dimitris Rizopoulos, 2019. "Personalized schedules for surveillance of low‐risk prostate cancer patients," Biometrics, The International Biometric Society, vol. 75(1), pages 153-162, March.
    11. Bernd Lütkenhöner & Türker Basel, 2013. "Predictive Modeling for Diagnostic Tests with High Specificity, but Low Sensitivity: A Study of the Glycerol Test in Patients with Suspected Menière’s Disease," PLOS ONE, Public Library of Science, vol. 8(11), pages 1-12, November.
    12. Robert Cudeck, 2005. "Fitting Psychometric Models with Methods Based on Automatic Differentiation," Psychometrika, Springer;The Psychometric Society, vol. 70(4), pages 599-617, December.
    13. Shamil D. Cooray & Lihini A. Wijeyaratne & Georgia Soldatos & John Allotey & Jacqueline A. Boyle & Helena J. Teede, 2020. "The Unrealised Potential for Predicting Pregnancy Complications in Women with Gestational Diabetes: A Systematic Review and Critical Appraisal," IJERPH, MDPI, vol. 17(9), pages 1-20, April.
    14. Leandro García Barrado & Els Coart & Tomasz Burzykowski, 2017. "Estimation of diagnostic accuracy of a combination of continuous biomarkers allowing for conditional dependence between the biomarkers and the imperfect reference-test," Biometrics, The International Biometric Society, vol. 73(2), pages 646-655, June.
    15. Minta Thomas & Yu-Ru Su & Elisabeth A. Rosenthal & Lori C. Sakoda & Stephanie L. Schmit & Maria N. Timofeeva & Zhishan Chen & Ceres Fernandez-Rozadilla & Philip J. Law & Neil Murphy & Robert Carreras-, 2023. "Combining Asian and European genome-wide association studies of colorectal cancer improves risk prediction across racial and ethnic populations," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    16. Khushal Arjan & Lui G Forni & Richard M Venn & David Hunt & Luke Eliot Hodgson, 2021. "Clinical decision-making in older adults following emergency admission to hospital. Derivation and validation of a risk stratification score: OPERA," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-12, March.
    17. Alex Thompson & Scott Devine & Mike Kattan & Andrew Muir, 2014. "Prediction of Treatment Week Eight Response & Sustained Virologic Response in Patients Treated with Boceprevir Plus Peginterferon Alfa and Ribavirin," PLOS ONE, Public Library of Science, vol. 9(8), pages 1-8, August.
    18. Clara Drew & Moses Badio & Dehkontee Dennis & Lisa Hensley & Elizabeth Higgs & Michael Sneller & Mosoka Fallah & Cavan Reilly, 2023. "Simplifying the estimation of diagnostic testing accuracy over time for high specificity tests in the absence of a gold standard," Biometrics, The International Biometric Society, vol. 79(2), pages 1546-1558, June.
    19. Geoffrey Jones & Wesley O. Johnson & Timothy E. Hanson & Ronald Christensen, 2010. "Identifiability of Models for Multiple Diagnostic Testing in the Absence of a Gold Standard," Biometrics, The International Biometric Society, vol. 66(3), pages 855-863, September.
    20. Christian Bock & Joan Elias Walter & Bastian Rieck & Ivo Strebel & Klara Rumora & Ibrahim Schaefer & Michael J. Zellweger & Karsten Borgwardt & Christian Müller, 2024. "Enhancing the diagnosis of functionally relevant coronary artery disease with machine learning," Nature Communications, Nature, vol. 15(1), pages 1-16, December.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bpj:ijbist:v:5:y:2009:i:1:n:5. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Peter Golla (email available below). General contact details of provider: https://www.degruyter.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.