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Bayesian nonparametric quantile process regression and estimation of marginal quantile effects

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  • Steven G. Xu
  • Brian J. Reich

Abstract

Flexible estimation of multiple conditional quantiles is of interest in numerous applications, such as studying the effect of pregnancy‐related factors on low and high birth weight. We propose a Bayesian nonparametric method to simultaneously estimate noncrossing, nonlinear quantile curves. We expand the conditional distribution function of the response in I‐spline basis functions where the covariate‐dependent coefficients are modeled using neural networks. By leveraging the approximation power of splines and neural networks, our model can approximate any continuous quantile function. Compared to existing models, our model estimates all rather than a finite subset of quantiles, scales well to high dimensions, and accounts for estimation uncertainty. While the model is arbitrarily flexible, interpretable marginal quantile effects are estimated using accumulative local effect plots and variable importance measures. A simulation study shows that our model can better recover quantiles of the response distribution when the data are sparse, and an analysis of birth weight data is presented.

Suggested Citation

  • Steven G. Xu & Brian J. Reich, 2023. "Bayesian nonparametric quantile process regression and estimation of marginal quantile effects," Biometrics, The International Biometric Society, vol. 79(1), pages 151-164, March.
  • Handle: RePEc:bla:biomet:v:79:y:2023:i:1:p:151-164
    DOI: 10.1111/biom.13576
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    References listed on IDEAS

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    1. Howard D. Bondell & Brian J. Reich & Huixia Wang, 2010. "Noncrossing quantile regression curve estimation," Biometrika, Biometrika Trust, vol. 97(4), pages 825-838.
    2. Daniel W. Apley & Jingyu Zhu, 2020. "Visualizing the effects of predictor variables in black box supervised learning models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 82(4), pages 1059-1086, September.
    3. Brian J. Reich & Luke B. Smith, 2013. "Bayesian Quantile Regression for Censored Data," Biometrics, The International Biometric Society, vol. 69(3), pages 651-660, September.
    4. Yun Yang & Surya T. Tokdar, 2017. "Joint Estimation of Quantile Planes Over Arbitrary Predictor Spaces," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(519), pages 1107-1120, July.
    5. Luke B. Smith & Brian J. Reich & Amy H. Herring & Peter H. Langlois & Montserrat Fuentes, 2015. "Multilevel quantile function modeling with application to birth outcomes," Biometrics, The International Biometric Society, vol. 71(2), pages 508-519, June.
    6. Jason Abrevaya, 2001. "The effects of demographics and maternal behavior on the distribution of birth outcomes," Empirical Economics, Springer, vol. 26(1), pages 247-257.
    7. Li, Rui & Reich, Brian J. & Bondell, Howard D., 2021. "Deep distribution regression," Computational Statistics & Data Analysis, Elsevier, vol. 159(C).
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