Clique-detection models in computational biochemistry and genomics

Citations

Cited by:

1. Alexander Veremyev & Oleg A. Prokopyev & Sergiy Butenko & Eduardo L. Pasiliao, 2016. "Exact MIP-based approaches for finding maximum quasi-cliques and dense subgraphs," Computational Optimization and Applications, Springer, vol. 64(1), pages 177-214, May.
2. Carvalho, Filipa D. & Almeida, M. Teresa, 2011. "Upper bounds and heuristics for the 2-club problem," European Journal of Operational Research, Elsevier, vol. 210(3), pages 489-494, May.
3. Li, Chu-Min & Liu, Yanli & Jiang, Hua & Manyà, Felip & Li, Yu, 2018. "A new upper bound for the maximum weight clique problem," European Journal of Operational Research, Elsevier, vol. 270(1), pages 66-77.
4. B. McClosky & S. D. Tanksley, 2013. "Optimizing Experimental Design in Genetics," Journal of Optimization Theory and Applications, Springer, vol. 157(2), pages 520-532, May.
5. Zhou, Yi & Lin, Weibo & Hao, Jin-Kao & Xiao, Mingyu & Jin, Yan, 2022. "An effective branch-and-bound algorithm for the maximum s-bundle problem," European Journal of Operational Research, Elsevier, vol. 297(1), pages 27-39.
6. Lasse Kiviluoto & Patric R. J. Östergård & Vesa P. Vaskelainen, 2016. "Algorithms for finding maximum transitive subtournaments," Journal of Combinatorial Optimization, Springer, vol. 31(2), pages 802-814, February.
7. Anurag Verma & Austin Buchanan & Sergiy Butenko, 2015. "Solving the Maximum Clique and Vertex Coloring Problems on Very Large Sparse Networks," INFORMS Journal on Computing, INFORMS, vol. 27(1), pages 164-177, February.
8. Stefano Coniglio & Stefano Gualandi, 2022. "Optimizing over the Closure of Rank Inequalities with a Small Right-Hand Side for the Maximum Stable Set Problem via Bilevel Programming," INFORMS Journal on Computing, INFORMS, vol. 34(2), pages 1006-1023, March.
9. Rosanna Grassi & Paolo Bartesaghi & Stefano Benati & Gian Paolo Clemente, 2021. "Multi-Attribute Community Detection in International Trade Network," Networks and Spatial Economics, Springer, vol. 21(3), pages 707-733, September.
10. Veremyev, Alexander & Boginski, Vladimir & Pasiliao, Eduardo L. & Prokopyev, Oleg A., 2022. "On integer programming models for the maximum 2-club problem and its robust generalizations in sparse graphs," European Journal of Operational Research, Elsevier, vol. 297(1), pages 86-101.
11. Evgeny Maslov & Mikhail Batsyn & Panos Pardalos, 2014. "Speeding up branch and bound algorithms for solving the maximum clique problem," Journal of Global Optimization, Springer, vol. 59(1), pages 1-21, May.
12. Benjamin McClosky & Illya V. Hicks, 2012. "Combinatorial algorithms for the maximum k-plex problem," Journal of Combinatorial Optimization, Springer, vol. 23(1), pages 29-49, January.
13. Kristjan Reba & Matej Guid & Kati Rozman & Dušanka Janežič & Janez Konc, 2021. "Exact Maximum Clique Algorithm for Different Graph Types Using Machine Learning," Mathematics, MDPI, vol. 10(1), pages 1-14, December.
14. Benjamin McClosky & Anthony Simms & Illya V. Hicks, 2011. "Co-2-plex polynomials," Journal of Combinatorial Optimization, Springer, vol. 22(4), pages 640-650, November.
15. San Segundo, Pablo & Coniglio, Stefano & Furini, Fabio & Ljubić, Ivana, 2019. "A new branch-and-bound algorithm for the maximum edge-weighted clique problem," European Journal of Operational Research, Elsevier, vol. 278(1), pages 76-90.
16. Zhou, Qing & Benlic, Una & Wu, Qinghua, 2020. "An opposition-based memetic algorithm for the maximum quasi-clique problem," European Journal of Operational Research, Elsevier, vol. 286(1), pages 63-83.
17. Nasirian, Farzaneh & Mahdavi Pajouh, Foad & Balasundaram, Balabhaskar, 2020. "Detecting a most closeness-central clique in complex networks," European Journal of Operational Research, Elsevier, vol. 283(2), pages 461-475.
18. Zhuqi Miao & Balabhaskar Balasundaram, 2020. "An Ellipsoidal Bounding Scheme for the Quasi-Clique Number of a Graph," INFORMS Journal on Computing, INFORMS, vol. 32(3), pages 763-778, July.
19. Mikhail Batsyn & Boris Goldengorin & Evgeny Maslov & Panos M. Pardalos, 2014. "Improvements to MCS algorithm for the maximum clique problem," Journal of Combinatorial Optimization, Springer, vol. 27(2), pages 397-416, February.
20. Oleksandra Yezerska & Sergiy Butenko & Vladimir L. Boginski, 2018. "Detecting robust cliques in graphs subject to uncertain edge failures," Annals of Operations Research, Springer, vol. 262(1), pages 109-132, March.
21. Foad Mahdavi Pajouh, 2020. "Minimum cost edge blocker clique problem," Annals of Operations Research, Springer, vol. 294(1), pages 345-376, November.
22. Svyatoslav Trukhanov & Chitra Balasubramaniam & Balabhaskar Balasundaram & Sergiy Butenko, 2013. "Algorithms for detecting optimal hereditary structures in graphs, with application to clique relaxations," Computational Optimization and Applications, Springer, vol. 56(1), pages 113-130, September.
23. Zhuqi Miao & Balabhaskar Balasundaram & Eduardo L. Pasiliao, 2014. "An exact algorithm for the maximum probabilistic clique problem," Journal of Combinatorial Optimization, Springer, vol. 28(1), pages 105-120, July.
24. Almeida, Maria Teresa & Carvalho, Filipa D., 2014. "An analytical comparison of the LP relaxations of integer models for the k-club problem," European Journal of Operational Research, Elsevier, vol. 232(3), pages 489-498.
25. Matsypura, Dmytro & Veremyev, Alexander & Pasiliao, Eduardo L. & Prokopyev, Oleg A., 2023. "Finding the most degree-central walks and paths in a graph: Exact and heuristic approaches," European Journal of Operational Research, Elsevier, vol. 308(3), pages 1021-1036.
26. Veremyev, Alexander & Prokopyev, Oleg A. & Boginski, Vladimir & Pasiliao, Eduardo L., 2014. "Finding maximum subgraphs with relatively large vertex connectivity," European Journal of Operational Research, Elsevier, vol. 239(2), pages 349-362.
27. Pattillo, Jeffrey & Youssef, Nataly & Butenko, Sergiy, 2013. "On clique relaxation models in network analysis," European Journal of Operational Research, Elsevier, vol. 226(1), pages 9-18.