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Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE

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  1. Watermeyer, K.E. & Jarre, A. & Shannon, L.J. & Mulumba, P. & Botha, J., 2018. "A frame-based modelling approach to understanding changes in the distribution and abundance of sardine and anchovy in the southern Benguela," Ecological Modelling, Elsevier, vol. 371(C), pages 1-17.
  2. Lamonica, Dominique & Herbach, Ulysse & Orias, Frédéric & Clément, Bernard & Charles, Sandrine & Lopes, Christelle, 2016. "Mechanistic modelling of daphnid-algae dynamics within a laboratory microcosm," Ecological Modelling, Elsevier, vol. 320(C), pages 213-230.
  3. Wu, Haoran, 2024. "ecode: An R package to investigate community dynamics in ordinary differential equation systems," Ecological Modelling, Elsevier, vol. 491(C).
  4. King, Elizabeth G. & Franz, Trenton E., 2016. "Combining ecohydrologic and transition probability-based modeling to simulate vegetation dynamics in a semi-arid rangeland," Ecological Modelling, Elsevier, vol. 329(C), pages 41-63.
  5. Watson, Joseph W & Boyd, Robin & Dutta, Ritabrata & Vasdekis, Georgios & Walker, Nicola D. & Roy, Shovonlal & Everitt, Richard & Hyder, Kieran & Sibly, Richard M, 2022. "Incorporating environmental variability in a spatially-explicit individual-based model of European sea bass✰," Ecological Modelling, Elsevier, vol. 466(C).
  6. Planque, Benjamin & Aarflot, Johanna M. & Buttay, Lucie & Carroll, JoLynn & Fransner, Filippa & Hansen, Cecilie & Husson, Bérengère & Langangen, Øystein & Lindstrøm, Ulf & Pedersen, Torstein & Primice, 2022. "A standard protocol for describing the evaluation of ecological models," Ecological Modelling, Elsevier, vol. 471(C).
  7. Bernardo Alves Furtado, 2022. "PolicySpace2: Modeling Markets and Endogenous Public Policies," Journal of Artificial Societies and Social Simulation, Journal of Artificial Societies and Social Simulation, vol. 25(1), pages 1-8.
  8. Courbaud, B. & Lafond, V. & Lagarrigues, G. & Vieilledent, G. & Cordonnier, T. & Jabot, F. & de Coligny, F., 2015. "Applying ecological model evaludation: Lessons learned with the forest dynamics model Samsara2," Ecological Modelling, Elsevier, vol. 314(C), pages 1-14.
  9. Erickson, Richard A. & Eager, Eric A. & Kocovsky, Patrick M. & Glover, David C. & Kallis, Jahn L. & Long, K.R., 2018. "A spatially discrete, integral projection model and its application to invasive carp," Ecological Modelling, Elsevier, vol. 387(C), pages 163-171.
  10. Martínez-López, Javier & Martínez-Fernández, Julia & Naimi, Babak & Carreño, María F. & Esteve, Miguel A., 2015. "An open-source spatio-dynamic wetland model of plant community responses to hydrological pressures," Ecological Modelling, Elsevier, vol. 306(C), pages 326-333.
  11. Schmolke, Amelie & Bartell, Steven M. & Roy, Colleen & Green, Nicholas & Galic, Nika & Brain, Richard, 2019. "Species-specific population dynamics and their link to an aquatic food web: A hybrid modeling approach," Ecological Modelling, Elsevier, vol. 405(C), pages 1-14.
  12. Erickson, Richard A. & Eager, Eric A. & Brey, Marybeth K. & Hansen, Michael J. & Kocovsky, Patrick M., 2017. "An integral projection model with YY-males and application to evaluating grass carp control," Ecological Modelling, Elsevier, vol. 361(C), pages 14-25.
  13. Crouse, Kristin N. & Desai, Nisarg P. & Cassidy, Kira A. & Stahler, Erin E. & Lehman, Clarence L. & Wilson, Michael L., 2022. "Larger territories reduce mortality risk for chimpanzees, wolves, and agents: Multiple lines of evidence in a model validation framework," Ecological Modelling, Elsevier, vol. 471(C).
  14. Grimm, Volker & Berger, Uta, 2016. "Structural realism, emergence, and predictions in next-generation ecological modelling: Synthesis from a special issue," Ecological Modelling, Elsevier, vol. 326(C), pages 177-187.
  15. Jette Reeg & Simon Heine & Christine Mihan & Sean McGee & Thomas G Preuss & Florian Jeltsch, 2020. "Herbicide risk assessments of non-target terrestrial plant communities: A graphical user interface for the plant community model IBC-grass," PLOS ONE, Public Library of Science, vol. 15(3), pages 1-18, March.
  16. Wouter Vermeer & Arthur Hjorth & Samuel M. Jenness & C Hendrick Brown & Uri Wilensky, 2020. "Leveraging Modularity During Replication of High-Fidelity Models: Lessons from Replicating an Agent-Based Model for HIV Prevention," Journal of Artificial Societies and Social Simulation, Journal of Artificial Societies and Social Simulation, vol. 23(4), pages 1-7.
  17. Cartwright, Samantha J. & Bowgen, Katharine M. & Collop, Catherine & Hyder, Kieran & Nabe-Nielsen, Jacob & Stafford, Richard & Stillman, Richard A. & Thorpe, Robert B. & Sibly, Richard M., 2016. "Communicating complex ecological models to non-scientist end users," Ecological Modelling, Elsevier, vol. 338(C), pages 51-59.
  18. Boult, Victoria L. & Quaife, Tristan & Fishlock, Vicki & Moss, Cynthia J. & Lee, Phyllis C. & Sibly, Richard M., 2018. "Individual-based modelling of elephant population dynamics using remote sensing to estimate food availability," Ecological Modelling, Elsevier, vol. 387(C), pages 187-195.
  19. Guus ten Broeke & Hilde Tobi, 2021. "Mapping validity and validation in modelling for interdisciplinary research," Quality & Quantity: International Journal of Methodology, Springer, vol. 55(5), pages 1613-1630, October.
  20. Weller, Florian & Sherley, Richard B. & Waller, Lauren J. & Ludynia, Katrin & Geldenhuys, Deon & Shannon, Lynne J. & Jarre, Astrid, 2016. "System dynamics modelling of the Endangered African penguin populations on Dyer and Robben islands, South Africa," Ecological Modelling, Elsevier, vol. 327(C), pages 44-56.
  21. Dick, D.D.C. & Ayllón, D., 2017. "FloMan-MF: Floodplain Management for the Moor Frog − a simulation model for amphibian conservation in dynamic wetlands," Ecological Modelling, Elsevier, vol. 348(C), pages 110-124.
  22. Chudzinska, Magda & Nabe-Nielsen, Jacob & Smout, Sophie & Aarts, Geert & Brasseur, Sophie & Graham, Isla & Thompson, Paul & McConnell, Bernie, 2021. "AgentSeal: Agent-based model describing movement of marine central-place foragers," Ecological Modelling, Elsevier, vol. 440(C).
  23. An, Li & Grimm, Volker & Sullivan, Abigail & Turner II, B.L. & Malleson, Nicolas & Heppenstall, Alison & Vincenot, Christian & Robinson, Derek & Ye, Xinyue & Liu, Jianguo & Lindkvist, Emilie & Tang, W, 2021. "Challenges, tasks, and opportunities in modeling agent-based complex systems," Ecological Modelling, Elsevier, vol. 457(C).
  24. Liukkonen, Lauri & Ayllón, Daniel & Kunnasranta, Mervi & Niemi, Marja & Nabe-Nielsen, Jacob & Grimm, Volker & Nyman, Anna-Maija, 2018. "Modelling movements of Saimaa ringed seals using an individual-based approach," Ecological Modelling, Elsevier, vol. 368(C), pages 321-335.
  25. Troost, Christian & Huber, Robert & Bell, Andrew R. & van Delden, Hedwig & Filatova, Tatiana & Le, Quang Bao & Lippe, Melvin & Niamir, Leila & Polhill, J. Gareth & Sun, Zhanli & Berger, Thomas, 2023. "How to keep it adequate: A protocol for ensuring validity in agent-based simulation," EconStor Open Access Articles and Book Chapters, ZBW - Leibniz Information Centre for Economics, vol. 159, pages 1-21.
  26. Garcia, Clement & Stillman, Richard A. & Forster, Rodney M. & Silva, Tiago & Bremner, Julie, 2016. "Nuclear power and coastal birds: Predicting the ecological consequences of warm-water outflows," Ecological Modelling, Elsevier, vol. 342(C), pages 60-81.
  27. Walker, Nicola D. & Boyd, Robin & Watson, Joseph & Kotz, Max & Radford, Zachary & Readdy, Lisa & Sibly, Richard & Roy, Shovonlal & Hyder, Kieran, 2020. "A spatially explicit individual-based model to support management of commercial and recreational fisheries for European sea bass Dicentrarchus labrax," Ecological Modelling, Elsevier, vol. 431(C).
  28. Getachew F. Belete & Alexey Voinov & Iñaki Arto & Kishore Dhavala & Tatyana Bulavskaya & Leila Niamir & Saeed Moghayer & Tatiana Filatova, 2019. "Exploring Low-Carbon Futures: A Web Service Approach to Linking Diverse Climate-Energy-Economy Models," Energies, MDPI, vol. 12(15), pages 1-24, July.
  29. Ayllón, Daniel & Railsback, Steven F. & Vincenzi, Simone & Groeneveld, Jürgen & Almodóvar, Ana & Grimm, Volker, 2016. "InSTREAM-Gen: Modelling eco-evolutionary dynamics of trout populations under anthropogenic environmental change," Ecological Modelling, Elsevier, vol. 326(C), pages 36-53.
  30. Boyd, Robin & Roy, Shovonlal & Sibly, Richard & Thorpe, Robert & Hyder, Kieran, 2018. "A general approach to incorporating spatial and temporal variation in individual-based models of fish populations with application to Atlantic mackerel," Ecological Modelling, Elsevier, vol. 382(C), pages 9-17.
  31. Fitts, Lucia A. & Fraser, Jacob S. & Miranda, Brian R. & Domke, Grant M. & Russell, Matthew B. & Sturtevant, Brian R., 2023. "An iterative site-scale approach to calibrate and corroborate successional processes within a forest landscape model," Ecological Modelling, Elsevier, vol. 477(C).
  32. Drechsler, Martin & Wätzold, Frank & Grimm, Volker, 2022. "The hitchhiker's guide to generic ecological-economic modelling of land-use-based biodiversity conservation policies," Ecological Modelling, Elsevier, vol. 465(C).
  33. Lapp, Maya & Long, Colby, 2022. "A new approach to agent-based models of Community Resource Management based on the analysis of cheating, monitoring, and sanctioning," Ecological Modelling, Elsevier, vol. 468(C).
  34. Lorscheid, Iris & Meyer, Matthias, 2016. "Divide and conquer: Configuring submodels for valid and efficient analyses of complex simulation models," Ecological Modelling, Elsevier, vol. 326(C), pages 152-161.
  35. Negm, Lamyaa M. & Youssef, Mohamed A. & Jaynes, Dan B., 2017. "Evaluation of DRAINMOD-DSSAT simulated effects of controlled drainage on crop yield, water balance, and water quality for a corn-soybean cropping system in central Iowa," Agricultural Water Management, Elsevier, vol. 187(C), pages 57-68.
  36. Komarov, Alexander & Chertov, Oleg & Bykhovets, Sergey & Shaw, Cindy & Nadporozhskaya, Marina & Frolov, Pavel & Shashkov, Maxim & Shanin, Vladimir & Grabarnik, Pavel & Priputina, Irina & Zubkova, Elen, 2017. "Romul_Hum model of soil organic matter formation coupled with soil biota activity. I. Problem formulation, model description, and testing," Ecological Modelling, Elsevier, vol. 345(C), pages 113-124.
  37. Keane, Robert E. & McKenzie, Donald & Falk, Donald A. & Smithwick, Erica A.H. & Miller, Carol & Kellogg, Lara-Karena B., 2015. "Representing climate, disturbance, and vegetation interactions in landscape models," Ecological Modelling, Elsevier, vol. 309, pages 33-47.
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