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Semiparametric Regression of Multidimensional Genetic Pathway Data: Least-Squares Kernel Machines and Linear Mixed Models

Citations

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Cited by:

  1. Jennifer A. Sinnott & Tianxi Cai, 2013. "Omnibus Risk Assessment via Accelerated Failure Time Kernel Machine Modeling," Biometrics, The International Biometric Society, vol. 69(4), pages 861-873, December.
  2. Paul Little & Li Hsu & Wei Sun, 2023. "Associating somatic mutation with clinical outcomes through kernel regression and optimal transport," Biometrics, The International Biometric Society, vol. 79(3), pages 2705-2718, September.
  3. Pluta, Dustin & Yu, Zhaoxia & Shen, Tong & Chen, Chuansheng & Xue, Gui & Ombao, Hernando, 2018. "Statistical methods and challenges in connectome genetics," Statistics & Probability Letters, Elsevier, vol. 136(C), pages 83-86.
  4. Tianxi Cai & Giulia Tonini & Xihong Lin, 2011. "Kernel Machine Approach to Testing the Significance of Multiple Genetic Markers for Risk Prediction," Biometrics, The International Biometric Society, vol. 67(3), pages 975-986, September.
  5. Fang Chen & Jing He & Jianqi Zhang & Gary K Chen & Venetta Thomas & Christine B Ambrosone & Elisa V Bandera & Sonja I Berndt & Leslie Bernstein & William J Blot & Qiuyin Cai & John Carpten & Graham Ca, 2015. "Methodological Considerations in Estimation of Phenotype Heritability Using Genome-Wide SNP Data, Illustrated by an Analysis of the Heritability of Height in a Large Sample of African Ancestry Adults," PLOS ONE, Public Library of Science, vol. 10(6), pages 1-17, June.
  6. Clemontina A. Davenport & Arnab Maity & Patrick F. Sullivan & Jung-Ying Tzeng, 2018. "A Powerful Test for SNP Effects on Multivariate Binary Outcomes Using Kernel Machine Regression," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 10(1), pages 117-138, April.
  7. Lin Zhang & Inyoung Kim, 2021. "Finite mixtures of semiparametric Bayesian survival kernel machine regressions: Application to breast cancer gene pathway subgroup analysis," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 70(2), pages 251-269, March.
  8. Arnab Maity & Xihong Lin, 2011. "Powerful Tests for Detecting a Gene Effect in the Presence of Possible Gene–Gene Interactions Using Garrote Kernel Machines," Biometrics, The International Biometric Society, vol. 67(4), pages 1271-1284, December.
  9. Xiang Zhan & Anna Plantinga & Ni Zhao & Michael C. Wu, 2017. "A fast small‐sample kernel independence test for microbiome community‐level association analysis," Biometrics, The International Biometric Society, vol. 73(4), pages 1453-1463, December.
  10. Weiming Zhang & Michael P. Epstein & Tasha E. Fingerlin & Debashis Ghosh, 2017. "Links Between the Sequence Kernel Association and the Kernel-Based Adaptive Cluster Tests," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 9(1), pages 246-258, June.
  11. Ghosh, Debashis, 2014. "An asymptotically minimax kernel machine," Statistics & Probability Letters, Elsevier, vol. 95(C), pages 33-38.
  12. Lulu Cheng & Inyoung Kim & Herbert Pang, 2016. "Bayesian Semiparametric Model for Pathway-Based Analysis with Zero-Inflated Clinical Outcomes," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 21(4), pages 641-662, December.
  13. Cho, Youngjoo & Zhan, Xiang & Ghosh, Debashis, 2022. "Nonlinear predictive directions in clinical trials," Computational Statistics & Data Analysis, Elsevier, vol. 174(C).
  14. Wen‐Yu Hua & Debashis Ghosh, 2015. "Equivalence of kernel machine regression and kernel distance covariance for multidimensional phenotype association studies," Biometrics, The International Biometric Society, vol. 71(3), pages 812-820, September.
  15. Xia Zheng & Yaohua Rong & Ling Liu & Weihu Cheng, 2021. "A More Accurate Estimation of Semiparametric Logistic Regression," Mathematics, MDPI, vol. 9(19), pages 1-12, September.
  16. Glen McGee & Ander Wilson & Thomas F. Webster & Brent A. Coull, 2023. "Bayesian multiple index models for environmental mixtures," Biometrics, The International Biometric Society, vol. 79(1), pages 462-474, March.
  17. Zhang Hongmei & Gan Jianjun, 2012. "A Reproducing Kernel-Based Spatial Model in Poisson Regressions," The International Journal of Biostatistics, De Gruyter, vol. 8(1), pages 1-26, October.
  18. Wei Dai & Ming Yang & Chaolong Wang & Tianxi Cai, 2017. "Sequence robust association test for familial data," Biometrics, The International Biometric Society, vol. 73(3), pages 876-884, September.
  19. Zaili Fang & Inyoung Kim & Patrick Schaumont, 2016. "Flexible variable selection for recovering sparsity in nonadditive nonparametric models," Biometrics, The International Biometric Society, vol. 72(4), pages 1155-1163, December.
  20. Chakraborty, Sounak, 2009. "Bayesian binary kernel probit model for microarray based cancer classification and gene selection," Computational Statistics & Data Analysis, Elsevier, vol. 53(12), pages 4198-4209, October.
  21. Long Qu & Tobias Guennel & Scott L. Marshall, 2013. "Linear Score Tests for Variance Components in Linear Mixed Models and Applications to Genetic Association Studies," Biometrics, The International Biometric Society, vol. 69(4), pages 883-892, December.
  22. Yunxuan Jiang & Karen N. Conneely & Michael P. Epstein, 2018. "Robust Rare-Variant Association Tests for Quantitative Traits in General Pedigrees," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 10(3), pages 491-505, December.
  23. Teran Hidalgo, Sebastian J. & Wu, Michael C. & Engel, Stephanie M. & Kosorok, Michael R., 2018. "Goodness-of-fit test for nonparametric regression models: Smoothing spline ANOVA models as example," Computational Statistics & Data Analysis, Elsevier, vol. 122(C), pages 135-155.
  24. Zaili Fang & Inyoung Kim & Jeesun Jung, 2018. "Semiparametric Kernel-Based Regression for Evaluating Interaction Between Pathway Effect and Covariate," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 23(1), pages 129-152, March.
  25. Luts, Jan & Molenberghs, Geert & Verbeke, Geert & Van Huffel, Sabine & Suykens, Johan A.K., 2012. "A mixed effects least squares support vector machine model for classification of longitudinal data," Computational Statistics & Data Analysis, Elsevier, vol. 56(3), pages 611-628.
  26. Nadezhda M Belonogova & Gulnara R Svishcheva & James F Wilson & Harry Campbell & Tatiana I Axenovich, 2018. "Weighted functional linear regression models for gene-based association analysis," PLOS ONE, Public Library of Science, vol. 13(1), pages 1-14, January.
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