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Conjugate sparse plus low rank models for efficient Bayesian interpolation of large spatial data

Author

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  • Shinichiro Shirota
  • Andrew O. Finley
  • Bruce D. Cook
  • Sudipto Banerjee

Abstract

A key challenge in spatial data science is the analysis for massive spatially‐referenced data sets. Such analyses often proceed from Gaussian process specifications that can produce rich and robust inference, but involve dense covariance matrices that lack computationally exploitable structures. Recent developments in spatial statistics offer a variety of massively scalable approaches. Bayesian inference and hierarchical models, in particular, have gained popularity due to their richness and flexibility in accommodating spatial processes. Our current contribution is to provide computationally efficient exact algorithms for spatial interpolation of massive data sets using scalable spatial processes. We combine low‐rank Gaussian processes with efficient sparse approximations. Following recent work by Zhang et al. (2019), we model the low‐rank process using a Gaussian predictive process (GPP) and the residual process as a sparsity‐inducing nearest‐neighbor Gaussian process (NNGP). A key contribution here is to implement these models using exact conjugate Bayesian modeling to avoid expensive iterative algorithms. Through the simulation studies, we evaluate performance of the proposed approach and the robustness of our models, especially for long range prediction. We implement our approaches for remotely sensed light detection and ranging (LiDAR) data collected over the US Forest Service Tanana Inventory Unit (TIU) in a remote portion of Interior Alaska.

Suggested Citation

  • Shinichiro Shirota & Andrew O. Finley & Bruce D. Cook & Sudipto Banerjee, 2023. "Conjugate sparse plus low rank models for efficient Bayesian interpolation of large spatial data," Environmetrics, John Wiley & Sons, Ltd., vol. 34(1), February.
  • Handle: RePEc:wly:envmet:v:34:y:2023:i:1:n:e2748
    DOI: 10.1002/env.2748
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    References listed on IDEAS

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    1. Abhirup Datta & Sudipto Banerjee & Andrew O. Finley & Alan E. Gelfand, 2016. "Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 800-812, April.
    2. Sudipto Banerjee & Alan E. Gelfand & Andrew O. Finley & Huiyan Sang, 2008. "Gaussian predictive process models for large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(4), pages 825-848, September.
    3. Ren, Qian & Banerjee, Sudipto & Finley, Andrew O. & Hodges, James S., 2011. "Variational Bayesian methods for spatial data analysis," Computational Statistics & Data Analysis, Elsevier, vol. 55(12), pages 3197-3217, December.
    4. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    5. Finley, Andrew O. & Sang, Huiyan & Banerjee, Sudipto & Gelfand, Alan E., 2009. "Improving the performance of predictive process modeling for large datasets," Computational Statistics & Data Analysis, Elsevier, vol. 53(8), pages 2873-2884, June.
    6. Gneiting, Tilmann & Raftery, Adrian E., 2007. "Strictly Proper Scoring Rules, Prediction, and Estimation," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 359-378, March.
    7. Huiyan Sang & Jianhua Z. Huang, 2012. "A full scale approximation of covariance functions for large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(1), pages 111-132, January.
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    1. Andrew Zammit‐Mangion & Nathaniel K. Newlands & Wesley S. Burr, 2023. "Environmental data science: Part 1," Environmetrics, John Wiley & Sons, Ltd., vol. 34(1), February.
    2. Elliot S. Shannon & Andrew O. Finley & Daniel J. Hayes & Sylvia N. Noralez & Aaron R. Weiskittel & Bruce D. Cook & Chad Babcock, 2024. "Quantifying and correcting geolocation error in spaceborne LiDAR forest canopy observations using high spatial accuracy data: A Bayesian model approach," Environmetrics, John Wiley & Sons, Ltd., vol. 35(4), June.
    3. Si Cheng & Bledar A. Konomi & Georgios Karagiannis & Emily L. Kang, 2024. "Recursive nearest neighbor co‐kriging models for big multi‐fidelity spatial data sets," Environmetrics, John Wiley & Sons, Ltd., vol. 35(4), June.

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