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Vecchia Approximations of Gaussian-Process Predictions

Author

Listed:
  • Matthias Katzfuss

    (Texas A&M University)

  • Joseph Guinness

    (Cornell University)

  • Wenlong Gong

    (Texas A&M University
    NC State University)

  • Daniel Zilber

    (Texas A&M University)

Abstract

Gaussian processes (GPs) are highly flexible function estimators used for geospatial analysis, nonparametric regression, and machine learning, but they are computationally infeasible for large datasets. Vecchia approximations of GPs have been used to enable fast evaluation of the likelihood for parameter inference. Here, we study Vecchia approximations of spatial predictions at observed and unobserved locations, including obtaining joint predictive distributions at large sets of locations. We consider a general Vecchia framework for GP predictions, which contains some novel and some existing special cases. We study the accuracy and computational properties of these approaches theoretically and numerically, proving that our new methods exhibit linear computational complexity in the total number of spatial locations. We show that certain choices within the framework can have a strong effect on uncertainty quantification and computational cost, which leads to specific recommendations on which methods are most suitable for various settings. We also apply our methods to a satellite dataset of chlorophyll fluorescence, showing that the new methods are faster or more accurate than existing methods and reduce unrealistic artifacts in prediction maps. Supplementary materials accompanying this paper appear on-line.

Suggested Citation

  • Matthias Katzfuss & Joseph Guinness & Wenlong Gong & Daniel Zilber, 2020. "Vecchia Approximations of Gaussian-Process Predictions," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 25(3), pages 383-414, September.
  • Handle: RePEc:spr:jagbes:v:25:y:2020:i:3:d:10.1007_s13253-020-00401-7
    DOI: 10.1007/s13253-020-00401-7
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    References listed on IDEAS

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    1. Abhirup Datta & Sudipto Banerjee & Andrew O. Finley & Alan E. Gelfand, 2016. "Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 800-812, April.
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    6. Joseph Guinness, 2019. "Spectral density estimation for random fields via periodic embeddings," Biometrika, Biometrika Trust, vol. 106(2), pages 267-286.
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    Cited by:

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    2. Jingjie Zhang & Matthias Katzfuss, 2022. "Multi-Scale Vecchia Approximations of Gaussian Processes," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(3), pages 440-460, September.
    3. Zilber, Daniel & Katzfuss, Matthias, 2021. "Vecchia–Laplace approximations of generalized Gaussian processes for big non-Gaussian spatial data," Computational Statistics & Data Analysis, Elsevier, vol. 153(C).
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