IDEAS home Printed from https://ideas.repec.org/a/spr/jagbes/v26y2021i4d10.1007_s13253-021-00457-z.html
   My bibliography  Save this article

Competition on Spatial Statistics for Large Datasets

Author

Listed:
  • Huang Huang

    (King Abdullah University of Science and Technology (KAUST))

  • Sameh Abdulah

    (King Abdullah University of Science and Technology (KAUST))

  • Ying Sun

    (King Abdullah University of Science and Technology (KAUST))

  • Hatem Ltaief

    (King Abdullah University of Science and Technology (KAUST))

  • David E. Keyes

    (King Abdullah University of Science and Technology (KAUST))

  • Marc G. Genton

    (King Abdullah University of Science and Technology (KAUST))

Abstract

As spatial datasets are becoming increasingly large and unwieldy, exact inference on spatial models becomes computationally prohibitive. Various approximation methods have been proposed to reduce the computational burden. Although comprehensive reviews on these approximation methods exist, comparisons of their performances are limited to small and medium sizes of datasets for a few selected methods. To achieve a comprehensive comparison comprising as many methods as possible, we organized the Competition on Spatial Statistics for Large Datasets. This competition had the following novel features: (1) we generated synthetic datasets with the ExaGeoStat software so that the number of generated realizations ranged from 100 thousand to 1 million; (2) we systematically designed the data-generating models to represent spatial processes with a wide range of statistical properties for both Gaussian and non-Gaussian cases; (3) the competition tasks included both estimation and prediction, and the results were assessed by multiple criteria; and (4) we have made all the datasets and competition results publicly available to serve as a benchmark for other approximation methods. In this paper, we disclose all the competition details and results along with some analysis of the competition outcomes.

Suggested Citation

  • Huang Huang & Sameh Abdulah & Ying Sun & Hatem Ltaief & David E. Keyes & Marc G. Genton, 2021. "Competition on Spatial Statistics for Large Datasets," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(4), pages 580-595, December.
    • Handle: RePEc:spr:jagbes:v:26:y:2021:i:4:d:10.1007_s13253-021-00457-z
    DOI: 10.1007/s13253-021-00457-z
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s13253-021-00457-z
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.
    File URL: https://libkey.io/10.1007/s13253-021-00457-z?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Abhirup Datta & Sudipto Banerjee & Andrew O. Finley & Alan E. Gelfand, 2016. "Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 800-812, April.
    2. Matthew J. Heaton & Abhirup Datta & Andrew O. Finley & Reinhard Furrer & Joseph Guinness & Rajarshi Guhaniyogi & Florian Gerber & Robert B. Gramacy & Dorit Hammerling & Matthias Katzfuss & Finn Lindgr, 2019. "A Case Study Competition Among Methods for Analyzing Large Spatial Data," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 24(3), pages 398-425, September.
    3. Kaufman, Cari G. & Schervish, Mark J. & Nychka, Douglas W., 2008. "Covariance Tapering for Likelihood-Based Estimation in Large Spatial Data Sets," Journal of the American Statistical Association, American Statistical Association, vol. 103(484), pages 1545-1555.
    4. Sudipto Banerjee & Alan E. Gelfand & Andrew O. Finley & Huiyan Sang, 2008. "Gaussian predictive process models for large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(4), pages 825-848, September.
    5. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    6. Litvinenko, Alexander & Sun, Ying & Genton, Marc G. & Keyes, David E., 2019. "Likelihood approximation with hierarchical matrices for large spatial datasets," Computational Statistics & Data Analysis, Elsevier, vol. 137(C), pages 115-132.
    7. Cristiano Varin, 2008. "On composite marginal likelihoods," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 92(1), pages 1-28, February.
    8. Noel Cressie & Gardar Johannesson, 2008. "Fixed rank kriging for very large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(1), pages 209-226, February.
    9. Huiyan Sang & Jianhua Z. Huang, 2012. "A full scale approximation of covariance functions for large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(1), pages 111-132, January.
    10. Matthias Katzfuss, 2017. "A Multi-Resolution Approximation for Massive Spatial Datasets," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(517), pages 201-214, January.
    11. Ganggang Xu & Marc G. Genton, 2017. "Tukey -and- Random Fields," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(519), pages 1236-1249, July.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Roman Flury & Reinhard Furrer, 2021. "Discussion on Competition for Spatial Statistics for Large Datasets," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(4), pages 599-603, December.
    2. Wanfang Chen & Marc G. Genton, 2023. "Are You All Normal? It Depends!," International Statistical Review, International Statistical Institute, vol. 91(1), pages 114-139, April.
    3. Denis Allard & Lucia Clarotto & Thomas Opitz & Thomas Romary, 2021. "Discussion on “Competition on Spatial Statistics for Large Datasets”," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(4), pages 604-611, December.
    4. Quan Vu & Yi Cao & Josh Jacobson & Alan R. Pearse & Andrew Zammit-Mangion, 2021. "Discussion on “Competition on Spatial Statistics for Large Datasets”," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(4), pages 614-618, December.
    5. Caamaño-Carrillo, Christian & Bevilacqua, Moreno & López, Cristian & Morales-Oñate, Víctor, 2024. "Nearest neighbors weighted composite likelihood based on pairs for (non-)Gaussian massive spatial data with an application to Tukey-hh random fields estimation," Computational Statistics & Data Analysis, Elsevier, vol. 191(C).
    6. Huang Huang & Sameh Abdulah & Ying Sun & Hatem Ltaief & David E. Keyes & Marc G. Genton, 2021. "Rejoinder," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(4), pages 621-623, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Jialuo Liu & Tingjin Chu & Jun Zhu & Haonan Wang, 2022. "Large spatial data modeling and analysis: A Krylov subspace approach," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 49(3), pages 1115-1143, September.
    2. Zilber, Daniel & Katzfuss, Matthias, 2021. "Vecchia–Laplace approximations of generalized Gaussian processes for big non-Gaussian spatial data," Computational Statistics & Data Analysis, Elsevier, vol. 153(C).
    3. Matthias Katzfuss & Joseph Guinness & Wenlong Gong & Daniel Zilber, 2020. "Vecchia Approximations of Gaussian-Process Predictions," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 25(3), pages 383-414, September.
    4. Caamaño-Carrillo, Christian & Bevilacqua, Moreno & López, Cristian & Morales-Oñate, Víctor, 2024. "Nearest neighbors weighted composite likelihood based on pairs for (non-)Gaussian massive spatial data with an application to Tukey-hh random fields estimation," Computational Statistics & Data Analysis, Elsevier, vol. 191(C).
    5. Matthew J. Heaton & Abhirup Datta & Andrew O. Finley & Reinhard Furrer & Joseph Guinness & Rajarshi Guhaniyogi & Florian Gerber & Robert B. Gramacy & Dorit Hammerling & Matthias Katzfuss & Finn Lindgr, 2019. "A Case Study Competition Among Methods for Analyzing Large Spatial Data," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 24(3), pages 398-425, September.
    6. Sameh Abdulah & Yuxiao Li & Jian Cao & Hatem Ltaief & David E. Keyes & Marc G. Genton & Ying Sun, 2023. "Large‐scale environmental data science with ExaGeoStatR," Environmetrics, John Wiley & Sons, Ltd., vol. 34(1), February.
    7. Isabelle Grenier & Bruno Sansó & Jessica L. Matthews, 2024. "Multivariate nearest‐neighbors Gaussian processes with random covariance matrices," Environmetrics, John Wiley & Sons, Ltd., vol. 35(3), May.
    8. Marchetti, Yuliya & Nguyen, Hai & Braverman, Amy & Cressie, Noel, 2018. "Spatial data compression via adaptive dispersion clustering," Computational Statistics & Data Analysis, Elsevier, vol. 117(C), pages 138-153.
    9. Morales-Oñate, Víctor & Crudu, Federico & Bevilacqua, Moreno, 2021. "Blockwise Euclidean likelihood for spatio-temporal covariance models," Econometrics and Statistics, Elsevier, vol. 20(C), pages 176-201.
    10. Si Cheng & Bledar A. Konomi & Georgios Karagiannis & Emily L. Kang, 2024. "Recursive nearest neighbor co‐kriging models for big multi‐fidelity spatial data sets," Environmetrics, John Wiley & Sons, Ltd., vol. 35(4), June.
    11. Jingjie Zhang & Matthias Katzfuss, 2022. "Multi-Scale Vecchia Approximations of Gaussian Processes," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(3), pages 440-460, September.
    12. Chen, Yewen & Chang, Xiaohui & Luo, Fangzhi & Huang, Hui, 2023. "Additive dynamic models for correcting numerical model outputs," Computational Statistics & Data Analysis, Elsevier, vol. 187(C).
    13. Bledar A. Konomi & Emily L. Kang & Ayat Almomani & Jonathan Hobbs, 2023. "Bayesian Latent Variable Co-kriging Model in Remote Sensing for Quality Flagged Observations," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 28(3), pages 423-441, September.
    14. Guhaniyogi, Rajarshi & Banerjee, Sudipto, 2019. "Multivariate spatial meta kriging," Statistics & Probability Letters, Elsevier, vol. 144(C), pages 3-8.
    15. Litvinenko, Alexander & Sun, Ying & Genton, Marc G. & Keyes, David E., 2019. "Likelihood approximation with hierarchical matrices for large spatial datasets," Computational Statistics & Data Analysis, Elsevier, vol. 137(C), pages 115-132.
    16. Peter A. Gao & Hannah M. Director & Cecilia M. Bitz & Adrian E. Raftery, 2022. "Probabilistic Forecasts of Arctic Sea Ice Thickness," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(2), pages 280-302, June.
    17. Edwards, Matthew & Castruccio, Stefano & Hammerling, Dorit, 2020. "Marginally parameterized spatio-temporal models and stepwise maximum likelihood estimation," Computational Statistics & Data Analysis, Elsevier, vol. 151(C).
    18. Erin M. Schliep, 2018. "Comments on: Process modeling for slope and aspect with application to elevation data maps," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 27(4), pages 778-782, December.
    19. Kelly R. Moran & Matthew W. Wheeler, 2022. "Fast increased fidelity samplers for approximate Bayesian Gaussian process regression," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 84(4), pages 1198-1228, September.
    20. Giovanna Jona Lasinio & Gianluca Mastrantonio & Alessio Pollice, 2013. "Discussing the “big n problem”," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 22(1), pages 97-112, March.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:jagbes:v:26:y:2021:i:4:d:10.1007_s13253-021-00457-z. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.