IDEAS home Printed from https://ideas.repec.org/a/spr/stabio/v16y2024i2d10.1007_s12561-023-09405-6.html
   My bibliography  Save this article

Detecting Shape-Based Interactions Among Environmental Chemicals Using an Ensemble of Exposure-Mixture Regression and Interpretable Machine Learning Tools

Author

Listed:
  • Vishal Midya

    (Icahn School of Medicine at Mount Sinai)

  • Chris Gennings

    (Icahn School of Medicine at Mount Sinai)

Abstract

There is growing interest in discovering interactions between multiple environmental chemicals associated with increased adverse health effects. However, most existing approaches (1) either use a projection or product of multiple chemical exposures, which are difficult to interpret and (2) cannot simultaneously handle multi-ordered interactions. Therefore, we develop and validate a method to discover shape-based interactions that mimic usual toxicological interactions. We developed the Multi-ordered explanatory interaction (Moxie) algorithm by merging the efficacy of Extreme Gradient Boosting with the inferential power of Weighted Quantile Sum regression to extract synergistic interactions associated with the outcome/odds of disease in an adverse direction. We evaluated the algorithm’s performance through simulations and compared it with the currently available gold standard, the signed-iterative random forest algorithm. We used the 2017–18 US-NHANES dataset (n = 447 adults) to evaluate interactions among nine per- and poly-fluoroalkyl substances and five metals measured in whole blood in association with serum low-density lipoprotein cholesterol. In simulations, the Moxie algorithm was highly specific and sensitive and had very low false discovery rates in detecting true synergistic interactions of 2nd, 3rd, and 4th order through moderate (n = 250) to large (n = 1000) sample sizes. In NHANES data, we found a two-order synergistic interaction between cadmium and lead detected in people with whole-blood cadmium concentrations and lead above 0.605 ug/dL and 1.485 ug/dL, respectively. Our findings demonstrate a novel validated approach in environmental epidemiology for detecting shape-based toxicologically mimicking interactions by integrating exposure-mixture regression and machine learning methods.

Suggested Citation

  • Vishal Midya & Chris Gennings, 2024. "Detecting Shape-Based Interactions Among Environmental Chemicals Using an Ensemble of Exposure-Mixture Regression and Interpretable Machine Learning Tools," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 16(2), pages 395-415, July.
  • Handle: RePEc:spr:stabio:v:16:y:2024:i:2:d:10.1007_s12561-023-09405-6
    DOI: 10.1007/s12561-023-09405-6
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s12561-023-09405-6
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s12561-023-09405-6?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Glen McGee & Ander Wilson & Thomas F. Webster & Brent A. Coull, 2023. "Bayesian multiple index models for environmental mixtures," Biometrics, The International Biometric Society, vol. 79(1), pages 462-474, March.
    2. Gérard Biau & Erwan Scornet, 2016. "A random forest guided tour," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 25(2), pages 197-227, June.
    3. Jeremiah Zhe Liu & Wenying Deng & Jane Lee & Pi-i Debby Lin & Linda Valeri & David C. Christiani & David C. Bellinger & Robert O. Wright & Maitreyi M. Mazumdar & Brent A. Coull, 2022. "A Cross-Validated Ensemble Approach to Robust Hypothesis Testing of Continuous Nonlinear Interactions: Application to Nutrition-Environment Studies," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 117(538), pages 561-573, April.
    4. Gérard Biau & Erwan Scornet, 2016. "Rejoinder on: A random forest guided tour," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 25(2), pages 264-268, June.
    5. Ben B. Hansen, 2004. "Full Matching in an Observational Study of Coaching for the SAT," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 609-618, January.
    6. Ho, Daniel & Imai, Kosuke & King, Gary & Stuart, Elizabeth A., 2011. "MatchIt: Nonparametric Preprocessing for Parametric Causal Inference," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 42(i08).
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Hou, Lei & Elsworth, Derek & Zhang, Fengshou & Wang, Zhiyuan & Zhang, Jianbo, 2023. "Evaluation of proppant injection based on a data-driven approach integrating numerical and ensemble learning models," Energy, Elsevier, vol. 264(C).
    2. Ma, Zhikai & Huo, Qian & Wang, Wei & Zhang, Tao, 2023. "Voltage-temperature aware thermal runaway alarming framework for electric vehicles via deep learning with attention mechanism in time-frequency domain," Energy, Elsevier, vol. 278(C).
    3. Patrick Krennmair & Timo Schmid, 2022. "Flexible domain prediction using mixed effects random forests," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 71(5), pages 1865-1894, November.
    4. Jie Shi & Arno P. J. M. Siebes & Siamak Mehrkanoon, 2023. "TransCORALNet: A Two-Stream Transformer CORAL Networks for Supply Chain Credit Assessment Cold Start," Papers 2311.18749, arXiv.org.
    5. Bourdouxhe, Axel & Wibail, Lionel & Claessens, Hugues & Dufrêne, Marc, 2023. "Modeling potential natural vegetation: A new light on an old concept to guide nature conservation in fragmented and degraded landscapes," Ecological Modelling, Elsevier, vol. 481(C).
    6. Manuel J. García Rodríguez & Vicente Rodríguez Montequín & Francisco Ortega Fernández & Joaquín M. Villanueva Balsera, 2019. "Public Procurement Announcements in Spain: Regulations, Data Analysis, and Award Price Estimator Using Machine Learning," Complexity, Hindawi, vol. 2019, pages 1-20, November.
    7. Borup, Daniel & Christensen, Bent Jesper & Mühlbach, Nicolaj Søndergaard & Nielsen, Mikkel Slot, 2023. "Targeting predictors in random forest regression," International Journal of Forecasting, Elsevier, vol. 39(2), pages 841-868.
    8. Yiyi Huo & Yingying Fan & Fang Han, 2023. "On the adaptation of causal forests to manifold data," Papers 2311.16486, arXiv.org, revised Dec 2023.
    9. Akshita Bassi & Aditya Manchanda & Rajwinder Singh & Mahesh Patel, 2023. "A comparative study of machine learning algorithms for the prediction of compressive strength of rice husk ash-based concrete," Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, Springer;International Society for the Prevention and Mitigation of Natural Hazards, vol. 118(1), pages 209-238, August.
    10. Sachin Kumar & Zairu Nisha & Jagvinder Singh & Anuj Kumar Sharma, 2022. "Sensor network driven novel hybrid model based on feature selection and SVR to predict indoor temperature for energy consumption optimisation in smart buildings," International Journal of System Assurance Engineering and Management, Springer;The Society for Reliability, Engineering Quality and Operations Management (SREQOM),India, and Division of Operation and Maintenance, Lulea University of Technology, Sweden, vol. 13(6), pages 3048-3061, December.
    11. Yong-Chao Su & Cheng-Yu Wu & Cheng-Hong Yang & Bo-Sheng Li & Sin-Hua Moi & Yu-Da Lin, 2021. "Machine Learning Data Imputation and Prediction of Foraging Group Size in a Kleptoparasitic Spider," Mathematics, MDPI, vol. 9(4), pages 1-16, February.
    12. Diogenis A. Kiziridis & Anna Mastrogianni & Magdalini Pleniou & Elpida Karadimou & Spyros Tsiftsis & Fotios Xystrakis & Ioannis Tsiripidis, 2022. "Acceleration and Relocation of Abandonment in a Mediterranean Mountainous Landscape: Drivers, Consequences, and Management Implications," Land, MDPI, vol. 11(3), pages 1-23, March.
    13. Escribano, Álvaro & Wang, Dandan, 2021. "Mixed random forest, cointegration, and forecasting gasoline prices," International Journal of Forecasting, Elsevier, vol. 37(4), pages 1442-1462.
    14. Hunish Bansal & Basavraj Chinagundi & Prashant Singh Rana & Neeraj Kumar, 2022. "An Ensemble Machine Learning Technique for Detection of Abnormalities in Knee Movement Sustainability," Sustainability, MDPI, vol. 14(20), pages 1-16, October.
    15. Yigit Aydede & Jan Ditzen, 2022. "Identifying the regional drivers of influenza-like illness in Nova Scotia with dominance analysis," Papers 2212.06684, arXiv.org.
    16. Siyoon Kwon & Hyoseob Noh & Il Won Seo & Sung Hyun Jung & Donghae Baek, 2021. "Identification Framework of Contaminant Spill in Rivers Using Machine Learning with Breakthrough Curve Analysis," IJERPH, MDPI, vol. 18(3), pages 1-26, January.
    17. Sylwester Bejger, 2024. "Machine Learning in Cartel Screening—The Case of Parallel Pricing in a Fuel Wholesale Market," Energies, MDPI, vol. 17(16), pages 1-17, August.
    18. Lotfi Boudabsa & Damir Filipovi'c, 2022. "Ensemble learning for portfolio valuation and risk management," Papers 2204.05926, arXiv.org.
    19. Yan, Ran & Wang, Shuaian & Du, Yuquan, 2020. "Development of a two-stage ship fuel consumption prediction and reduction model for a dry bulk ship," Transportation Research Part E: Logistics and Transportation Review, Elsevier, vol. 138(C).
    20. Daniel Boller & Michael Lechner & Gabriel Okasa, 2021. "The Effect of Sport in Online Dating: Evidence from Causal Machine Learning," Papers 2104.04601, arXiv.org.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:stabio:v:16:y:2024:i:2:d:10.1007_s12561-023-09405-6. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.