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Analysis of the Cox Model with Longitudinal Covariates with Measurement Errors and Partly Interval Censored Failure Times, with Application to an AIDS Clinical Trial

Author

Listed:
  • Yanqing Sun

    (University of North Carolina at Charlotte)

  • Qingning Zhou

    (University of North Carolina at Charlotte)

  • Peter B. Gilbert

    (Fred Hutchinson Cancer Center)

Abstract

Time-dependent covariates are often measured intermittently and with measurement errors. Motivated by the AIDS Clinical Trials Group (ACTG) 175 trial, this paper develops statistical inferences for the Cox model for partly interval censored failure times and longitudinal covariates with measurement errors. The conditional score methods developed for the Cox model with measurement errors and right censored data are no longer applicable to interval censored data. Assuming an additive measurement error model for a longitudinal covariate, we propose a nonparametric maximum likelihood estimation approach by deriving the measurement error induced hazard model that shows the attenuating effect of using the plug-in estimate for the true underlying longitudinal covariate. An EM algorithm is devised to facilitate maximum likelihood estimation that accounts for the partly interval censored failure times. The proposed methods can accommodate different numbers of replicates for different individuals and at different times. Simulation studies show that the proposed methods perform well with satisfactory finite-sample performances and that the naive methods ignoring measurement error or using the plug-in estimate can yield large biases. A hypothesis testing procedure for the measurement error model is proposed. The proposed methods are applied to the ACTG 175 trial to assess the associations of treatment arm and time-dependent CD4 cell count on the composite clinical endpoint of AIDS or death.

Suggested Citation

  • Yanqing Sun & Qingning Zhou & Peter B. Gilbert, 2023. "Analysis of the Cox Model with Longitudinal Covariates with Measurement Errors and Partly Interval Censored Failure Times, with Application to an AIDS Clinical Trial," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 15(2), pages 430-454, July.
    • Handle: RePEc:spr:stabio:v:15:y:2023:i:2:d:10.1007_s12561-023-09372-y
    DOI: 10.1007/s12561-023-09372-y
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    References listed on IDEAS

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    1. Jong S. Kim, 2003. "Maximum likelihood estimation for the proportional hazards model with partly interval‐censored data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 65(2), pages 489-502, May.
    2. Xiao Song & Yijian Huang, 2005. "On Corrected Score Approach for Proportional Hazards Model with Covariate Measurement Error," Biometrics, The International Biometric Society, vol. 61(3), pages 702-714, September.
    3. Donglin Zeng & Lu Mao & D. Y. Lin, 2016. "Maximum likelihood estimation for semiparametric transformation models with interval-censored data," Biometrika, Biometrika Trust, vol. 103(2), pages 253-271.
    4. Chengcheng Hu & D. Y. Lin, 2002. "Cox Regression with Covariate Measurement Error," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 29(4), pages 637-655, December.
    5. Ying Zhang & Lei Hua & Jian Huang, 2010. "A Spline‐Based Semiparametric Maximum Likelihood Estimation Method for the Cox Model with Interval‐Censored Data," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 37(2), pages 338-354, June.
    6. Lianming Wang & Christopher S. McMahan & Michael G. Hudgens & Zaina P. Qureshi, 2016. "A flexible, computationally efficient method for fitting the proportional hazards model to interval-censored data," Biometrics, The International Biometric Society, vol. 72(1), pages 222-231, March.
    7. Kani Chen, 2002. "Semiparametric analysis of transformation models with censored data," Biometrika, Biometrika Trust, vol. 89(3), pages 659-668, August.
    8. Rong Fu & Peter B. Gilbert, 2017. "Joint modeling of longitudinal and survival data with the Cox model and two-phase sampling," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 23(1), pages 136-159, January.
    9. Bates, Douglas & Mächler, Martin & Bolker, Ben & Walker, Steve, 2015. "Fitting Linear Mixed-Effects Models Using lme4," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 67(i01).
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