IDEAS home Printed from https://ideas.repec.org/a/spr/lifeda/v26y2020i1d10.1007_s10985-019-09461-5.html
   My bibliography  Save this article

Semiparametric inference for a two-stage outcome-dependent sampling design with interval-censored failure time data

Author

Listed:
  • Qingning Zhou

    (University of North Carolina at Charlotte)

  • Jianwen Cai

    (University of North Carolina at Chapel Hill)

  • Haibo Zhou

    (University of North Carolina at Chapel Hill)

Abstract

We propose a two-stage outcome-dependent sampling design and inference procedure for studies that concern interval-censored failure time outcomes. This design enhances the study efficiency by allowing the selection probabilities of the second-stage sample, for which the expensive exposure variable is ascertained, to depend on the first-stage observed interval-censored failure time outcomes. In particular, the second-stage sample is enriched by selectively including subjects who are known or observed to experience the failure at an early or late time. We develop a sieve semiparametric maximum pseudo likelihood procedure that makes use of all available data from the proposed two-stage design. The resulting regression parameter estimator is shown to be consistent and asymptotically normal, and a consistent estimator for its asymptotic variance is derived. Simulation results demonstrate that the proposed design and inference procedure performs well in practical situations and is more efficient than the existing designs and methods. An application to a phase 3 HIV vaccine trial is provided.

Suggested Citation

  • Qingning Zhou & Jianwen Cai & Haibo Zhou, 2020. "Semiparametric inference for a two-stage outcome-dependent sampling design with interval-censored failure time data," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 26(1), pages 85-108, January.
  • Handle: RePEc:spr:lifeda:v:26:y:2020:i:1:d:10.1007_s10985-019-09461-5
    DOI: 10.1007/s10985-019-09461-5
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s10985-019-09461-5
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s10985-019-09461-5?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Zhiguo Li & Peter Gilbert & Bin Nan, 2008. "Weighted Likelihood Method for Grouped Survival Data in Case–Cohort Studies with Application to HIV Vaccine Trials," Biometrics, The International Biometric Society, vol. 64(4), pages 1247-1255, December.
    2. Qingning Zhou & Jianwen Cai & Haibo Zhou, 2018. "Outcome†dependent sampling with interval†censored failure time data," Biometrics, The International Biometric Society, vol. 74(1), pages 58-67, March.
    3. Michal Kulich & D.Y. Lin, 2004. "Improving the Efficiency of Relative-Risk Estimation in Case-Cohort Studies," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 832-844, January.
    4. Chatterjee N. & Chen Y-H. & Breslow N.E., 2003. "A Pseudoscore Estimator for Regression Problems With Two-Phase Sampling," Journal of the American Statistical Association, American Statistical Association, vol. 98, pages 158-168, January.
    5. Q. Zhou & H. Zhou & J. Cai, 2017. "Case-cohort studies with interval-censored failure time data," Biometrika, Biometrika Trust, vol. 104(1), pages 17-29.
    6. Haibo Zhou & M. A. Weaver & J. Qin & M. P. Longnecker & M. C. Wang, 2002. "A Semiparametric Empirical Likelihood Method for Data from an Outcome-Dependent Sampling Scheme with a Continuous Outcome," Biometrics, The International Biometric Society, vol. 58(2), pages 413-421, June.
    7. Rui Song & Haibo Zhou & Michael R. Kosorok, 2009. "A note on semiparametric efficient inference for two-stage outcome-dependent sampling with a continuous outcome," Biometrika, Biometrika Trust, vol. 96(1), pages 221-228.
    8. Donglin Zeng & D. Y. Lin, 2014. "Efficient Estimation of Semiparametric Transformation Models for Two-Phase Cohort Studies," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(505), pages 371-383, March.
    9. S. Kang & J. Cai, 2009. "Marginal hazards model for case-cohort studies with multiple disease outcomes," Biometrika, Biometrika Trust, vol. 96(4), pages 887-901.
    10. Ying Zhang & Lei Hua & Jian Huang, 2010. "A Spline‐Based Semiparametric Maximum Likelihood Estimation Method for the Cox Model with Interval‐Censored Data," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 37(2), pages 338-354, June.
    11. Haibo Zhou & Rui Song & Yuanshan Wu & Jing Qin, 2011. "Statistical Inference for a Two-Stage Outcome-Dependent Sampling Design with a Continuous Outcome," Biometrics, The International Biometric Society, vol. 67(1), pages 194-202, March.
    12. Weaver, Mark A. & Zhou, Haibo, 2005. "An Estimated Likelihood Method for Continuous Outcome Regression Models With Outcome-Dependent Sampling," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 459-469, June.
    13. Jieli Ding & Tsui-Shan Lu & Jianwen Cai & Haibo Zhou, 2017. "Recent progresses in outcome-dependent sampling with failure time data," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 23(1), pages 57-82, January.
    14. Yanqing Sun & Xiyuan Qian & Qiong Shou & Peter B. Gilbert, 2017. "Analysis of two-phase sampling data with semiparametric additive hazards models," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 23(3), pages 377-399, July.
    15. Xue H. & Lam K.F. & Li G., 2004. "Sieve Maximum Likelihood Estimator for Semiparametric Regression Models With Current Status Data," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 346-356, January.
    16. Alice S. Whittemore, 1997. "Multistage Sampling Designs and Estimating Equations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 59(3), pages 589-602.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Qingning Zhou & Jianwen Cai & Haibo Zhou, 2018. "Outcome†dependent sampling with interval†censored failure time data," Biometrics, The International Biometric Society, vol. 74(1), pages 58-67, March.
    2. Jieli Ding & Tsui-Shan Lu & Jianwen Cai & Haibo Zhou, 2017. "Recent progresses in outcome-dependent sampling with failure time data," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 23(1), pages 57-82, January.
    3. Jichang Yu & Haibo Zhou & Jianwen Cai, 2021. "Accelerated failure time model for data from outcome-dependent sampling," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 27(1), pages 15-37, January.
    4. Haibo Zhou & Rui Song & Yuanshan Wu & Jing Qin, 2011. "Statistical Inference for a Two-Stage Outcome-Dependent Sampling Design with a Continuous Outcome," Biometrics, The International Biometric Society, vol. 67(1), pages 194-202, March.
    5. Yichen Lou & Peijie Wang & Jianguo Sun, 2023. "A semi-parametric weighted likelihood approach for regression analysis of bivariate interval-censored outcomes from case-cohort studies," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 29(3), pages 628-653, July.
    6. J. F. Lawless, 2018. "Two-phase outcome-dependent studies for failure times and testing for effects of expensive covariates," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 24(1), pages 28-44, January.
    7. Yayun Xu & Soyoung Kim & Mei-Jie Zhang & David Couper & Kwang Woo Ahn, 2022. "Competing risks regression models with covariates-adjusted censoring weight under the generalized case-cohort design," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 28(2), pages 241-262, April.
    8. Christopher Vahl & Qing Kang, 2015. "Analysis of an outcome-dependent enriched sample: hypothesis tests," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 24(3), pages 387-409, September.
    9. Haibo Zhou & Guoyou Qin & Matthew P. Longnecker, 2011. "A Partial Linear Model in the Outcome-Dependent Sampling Setting to Evaluate the Effect of Prenatal PCB Exposure on Cognitive Function in Children," Biometrics, The International Biometric Society, vol. 67(3), pages 876-885, September.
    10. Ying Yan & Haibo Zhou & Jianwen Cai, 2017. "Improving efficiency of parameter estimation in case-cohort studies with multivariate failure time data," Biometrics, The International Biometric Society, vol. 73(3), pages 1042-1052, September.
    11. Brady Ryan & Ananthika Nirmalkanna & Candemir Cigsar & Yildiz E. Yilmaz, 2023. "Evaluation of Designs and Estimation Methods Under Response-Dependent Two-Phase Sampling for Genetic Association Studies," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 15(2), pages 510-539, July.
    12. Jing Zhang & Haibo Zhou & Yanyan Liu & Jianwen Cai, 2021. "Conditional screening for ultrahigh-dimensional survival data in case-cohort studies," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 27(4), pages 632-661, October.
    13. Jing Zhang & Haibo Zhou & Yanyan Liu & Jianwen Cai, 2021. "Feature screening for case‐cohort studies with failure time outcome," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 48(1), pages 349-370, March.
    14. Xiaofei Wang & Haibo Zhou, 2010. "Design and Inference for Cancer Biomarker Study with an Outcome and Auxiliary-Dependent Subsampling," Biometrics, The International Biometric Society, vol. 66(2), pages 502-511, June.
    15. Jon Arni Steingrimsson & Robert L. Strawderman, 2017. "Estimation in the Semiparametric Accelerated Failure Time Model With Missing Covariates: Improving Efficiency Through Augmentation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(519), pages 1221-1235, July.
    16. Erik T. Parner & Per K. Andersen & Morten Overgaard, 2020. "Cumulative risk regression in case–cohort studies using pseudo-observations," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 26(4), pages 639-658, October.
    17. Jonathan S. Schildcrout & Shawn P. Garbett & Patrick J. Heagerty, 2013. "Outcome Vector Dependent Sampling with Longitudinal Continuous Response Data: Stratified Sampling Based on Summary Statistics," Biometrics, The International Biometric Society, vol. 69(2), pages 405-416, June.
    18. Yanqing Sun & Xiyuan Qian & Qiong Shou & Peter B. Gilbert, 2017. "Analysis of two-phase sampling data with semiparametric additive hazards models," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 23(3), pages 377-399, July.
    19. Li, Jinqing & Ma, Jun, 2019. "Maximum penalized likelihood estimation of additive hazards models with partly interval censoring," Computational Statistics & Data Analysis, Elsevier, vol. 137(C), pages 170-180.
    20. Hu, Jianwei & Chai, Hao, 2013. "Adjusted regularized estimation in the accelerated failure time model with high dimensional covariates," Journal of Multivariate Analysis, Elsevier, vol. 122(C), pages 96-114.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:lifeda:v:26:y:2020:i:1:d:10.1007_s10985-019-09461-5. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.