IDEAS home Printed from https://ideas.repec.org/a/spr/jagbes/v21y2016i3d10.1007_s13253-016-0251-8.html
   My bibliography  Save this article

A Fused Lasso Approach to Nonstationary Spatial Covariance Estimation

Author

Listed:
  • Ryan J. Parker

    (SAS Institute)

  • Brian J. Reich

    (North Carolina State University)

  • Jo Eidsvik

    (Norwegian University of Science and Technology)

Abstract

Spatial data are increasing in size and complexity due to technological advances. For an analysis of a large and diverse spatial domain, simplifying assumptions such as stationarity are questionable and standard computational algorithms are inadequate. In this paper, we propose a computationally efficient method to estimate a nonstationary covariance function. We partition the spatial domain into a fine grid of subregions and assign each subregion its own set of spatial covariance parameters. This introduces a large number of parameters and to stabilize the procedure we impose a penalty to spatially smooth the estimates. By penalizing the absolute difference between parameters for adjacent subregions, the solution can be identical for adjacent subregions and thus the method identifies stationary subdomains. To apply the method to large datasets, we use a block composite likelihood which is natural in this setting because it also operates on a partition of the spatial domain. The method is applied to tropospheric ozone in the US, and we find that the spatial covariance on the west coast differs from the rest of the country.

Suggested Citation

  • Ryan J. Parker & Brian J. Reich & Jo Eidsvik, 2016. "A Fused Lasso Approach to Nonstationary Spatial Covariance Estimation," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 21(3), pages 569-587, September.
  • Handle: RePEc:spr:jagbes:v:21:y:2016:i:3:d:10.1007_s13253-016-0251-8
    DOI: 10.1007/s13253-016-0251-8
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s13253-016-0251-8
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s13253-016-0251-8?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Kaufman, Cari G. & Schervish, Mark J. & Nychka, Douglas W., 2008. "Covariance Tapering for Likelihood-Based Estimation in Large Spatial Data Sets," Journal of the American Statistical Association, American Statistical Association, vol. 103(484), pages 1545-1555.
    2. Sudipto Banerjee & Alan E. Gelfand & Andrew O. Finley & Huiyan Sang, 2008. "Gaussian predictive process models for large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(4), pages 825-848, September.
    3. Julian Besag & Jeremy York & Annie Mollié, 1991. "Bayesian image restoration, with two applications in spatial statistics," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 43(1), pages 1-20, March.
    4. Jacob Bien & Robert J. Tibshirani, 2011. "Sparse estimation of a covariance matrix," Biometrika, Biometrika Trust, vol. 98(4), pages 807-820.
    5. Brian J. Reich & Howard H. Chang & Kristen M. Foley, 2014. "A spectral method for spatial downscaling," Biometrics, The International Biometric Society, vol. 70(4), pages 932-942, December.
    6. Michael L. Stein & Zhiyi Chi & Leah J. Welty, 2004. "Approximating likelihoods for large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 66(2), pages 275-296, May.
    7. Finn Lindgren & Håvard Rue & Johan Lindström, 2011. "An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(4), pages 423-498, September.
    8. Finley, Andrew O. & Sang, Huiyan & Banerjee, Sudipto & Gelfand, Alan E., 2009. "Improving the performance of predictive process modeling for large datasets," Computational Statistics & Data Analysis, Elsevier, vol. 53(8), pages 2873-2884, June.
    9. Robert Tibshirani & Michael Saunders & Saharon Rosset & Ji Zhu & Keith Knight, 2005. "Sparsity and smoothness via the fused lasso," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(1), pages 91-108, February.
    10. Noel Cressie & Gardar Johannesson, 2008. "Fixed rank kriging for very large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(1), pages 209-226, February.
    11. Joaquim Henriques Vianna Neto & Alexandra M. Schmidt & Peter Guttorp, 2014. "Accounting for spatially varying directional effects in spatial covariance structures," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 63(1), pages 103-122, January.
    12. Luke Bornn & Gavin Shaddick & James V. Zidek, 2012. "Modeling Nonstationary Processes Through Dimension Expansion," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(497), pages 281-289, March.
    13. Wenceslao González‐Manteiga & Rosa M. Crujeiras & Nan‐Jung Hsu & Ya‐Mei Chang & Hsin‐Cheng Huang, 2012. "A group lasso approach for non‐stationary spatial–temporal covariance estimation," Environmetrics, John Wiley & Sons, Ltd., vol. 23(1), pages 12-23, February.
    14. Montserrat Fuentes, 2002. "Spectral methods for nonstationary spatial processes," Biometrika, Biometrika Trust, vol. 89(1), pages 197-210, March.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Matthias Katzfuss & Joseph Guinness & Wenlong Gong & Daniel Zilber, 2020. "Vecchia Approximations of Gaussian-Process Predictions," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 25(3), pages 383-414, September.
    2. Jialuo Liu & Tingjin Chu & Jun Zhu & Haonan Wang, 2022. "Large spatial data modeling and analysis: A Krylov subspace approach," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 49(3), pages 1115-1143, September.
    3. Giovanna Jona Lasinio & Gianluca Mastrantonio & Alessio Pollice, 2013. "Discussing the “big n problem”," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 22(1), pages 97-112, March.
    4. Zilber, Daniel & Katzfuss, Matthias, 2021. "Vecchia–Laplace approximations of generalized Gaussian processes for big non-Gaussian spatial data," Computational Statistics & Data Analysis, Elsevier, vol. 153(C).
    5. Karl Pazdernik & Ranjan Maitra & Douglas Nychka & Stephan Sain, 2018. "Reduced Basis Kriging for Big Spatial Fields," Sankhya A: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 80(2), pages 280-300, August.
    6. Caamaño-Carrillo, Christian & Bevilacqua, Moreno & López, Cristian & Morales-Oñate, Víctor, 2024. "Nearest neighbors weighted composite likelihood based on pairs for (non-)Gaussian massive spatial data with an application to Tukey-hh random fields estimation," Computational Statistics & Data Analysis, Elsevier, vol. 191(C).
    7. Marchetti, Yuliya & Nguyen, Hai & Braverman, Amy & Cressie, Noel, 2018. "Spatial data compression via adaptive dispersion clustering," Computational Statistics & Data Analysis, Elsevier, vol. 117(C), pages 138-153.
    8. Matthew J. Heaton & Abhirup Datta & Andrew O. Finley & Reinhard Furrer & Joseph Guinness & Rajarshi Guhaniyogi & Florian Gerber & Robert B. Gramacy & Dorit Hammerling & Matthias Katzfuss & Finn Lindgr, 2019. "A Case Study Competition Among Methods for Analyzing Large Spatial Data," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 24(3), pages 398-425, September.
    9. Sameh Abdulah & Yuxiao Li & Jian Cao & Hatem Ltaief & David E. Keyes & Marc G. Genton & Ying Sun, 2023. "Large‐scale environmental data science with ExaGeoStatR," Environmetrics, John Wiley & Sons, Ltd., vol. 34(1), February.
    10. Furrer, Reinhard & Bachoc, François & Du, Juan, 2016. "Asymptotic properties of multivariate tapering for estimation and prediction," Journal of Multivariate Analysis, Elsevier, vol. 149(C), pages 177-191.
    11. Morales-Oñate, Víctor & Crudu, Federico & Bevilacqua, Moreno, 2021. "Blockwise Euclidean likelihood for spatio-temporal covariance models," Econometrics and Statistics, Elsevier, vol. 20(C), pages 176-201.
    12. Si Cheng & Bledar A. Konomi & Georgios Karagiannis & Emily L. Kang, 2024. "Recursive nearest neighbor co‐kriging models for big multi‐fidelity spatial data sets," Environmetrics, John Wiley & Sons, Ltd., vol. 35(4), June.
    13. Matthias Katzfuss, 2017. "A Multi-Resolution Approximation for Massive Spatial Datasets," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(517), pages 201-214, January.
    14. Jonathan Bradley & Noel Cressie & Tao Shi, 2015. "Comparing and selecting spatial predictors using local criteria," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 24(1), pages 1-28, March.
    15. Mahdi Hosseinpouri & Majid Jafari Khaledi, 2019. "An area-specific stick breaking process for spatial data," Statistical Papers, Springer, vol. 60(1), pages 199-221, February.
    16. Eidsvik, Jo & Finley, Andrew O. & Banerjee, Sudipto & Rue, Håvard, 2012. "Approximate Bayesian inference for large spatial datasets using predictive process models," Computational Statistics & Data Analysis, Elsevier, vol. 56(6), pages 1362-1380.
    17. Jingjie Zhang & Matthias Katzfuss, 2022. "Multi-Scale Vecchia Approximations of Gaussian Processes," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 27(3), pages 440-460, September.
    18. Chen, Yewen & Chang, Xiaohui & Luo, Fangzhi & Huang, Hui, 2023. "Additive dynamic models for correcting numerical model outputs," Computational Statistics & Data Analysis, Elsevier, vol. 187(C).
    19. Bledar A. Konomi & Emily L. Kang & Ayat Almomani & Jonathan Hobbs, 2023. "Bayesian Latent Variable Co-kriging Model in Remote Sensing for Quality Flagged Observations," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 28(3), pages 423-441, September.
    20. Paciorek, Christopher J. & Lipshitz, Benjamin & Zhuo, Wei & Prabhat, . & Kaufman, Cari G. G. & Thomas, Rollin C., 2015. "Parallelizing Gaussian Process Calculations in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 63(i10).

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:jagbes:v:21:y:2016:i:3:d:10.1007_s13253-016-0251-8. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.