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A Test of Positive Association for Detecting Heterogeneity in Capture for Capture–Recapture Data

Author

Listed:
  • Anita Jeyam

    (University of Kent)

  • Rachel S. McCrea

    (University of Kent)

  • Thomas Bregnballe

    (Aarhus University)

  • Morten Frederiksen

    (Aarhus University)

  • Roger Pradel

    (Centre d’Ecologie Fonctionnelle et Evolutive UMR 5175, CNRS - Université de Montpellier - Université Paul-Valéry)

Abstract

The Cormack–Jolly–Seber (CJS) model assumes that all marked animals have equal recapture probabilities at each sampling occasion, but heterogeneity in capture often occurs and should be taken into account to avoid biases in parameter estimates. Although diagnostic tests are generally used to detect trap-dependence or transience and assess the overall fit of the model, heterogeneity in capture is not routinely tested for. In order to detect and identify this phenomenon in a CJS framework, we propose a test of positive association between previous and future encounters using Goodman–Kruskal’s gamma. This test is based solely on the raw capture histories and makes no assumption on model structure. The development of the test is motivated by a dataset of Sandwich terns (Thalasseus sandvicensis), and we use the test to formally show that they exhibit heterogeneity in capture. We use simulation to assess the performance of the test in the detection of heterogeneity in capture, compared to existing and corrected diagnostic goodness-of-fit tests, Leslie’s test of equal catchability and Carothers’ extension of the Leslie test. The test of positive association is easy to use and produces good results, demonstrating high power to detect heterogeneity in capture. We recommend using this new test prior to model fitting as the outcome will guide the model-building process and help draw more accurate biological conclusions. Supplementary materials accompanying this paper appear online.

Suggested Citation

  • Anita Jeyam & Rachel S. McCrea & Thomas Bregnballe & Morten Frederiksen & Roger Pradel, 2018. "A Test of Positive Association for Detecting Heterogeneity in Capture for Capture–Recapture Data," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 23(1), pages 1-19, March.
  • Handle: RePEc:spr:jagbes:v:23:y:2018:i:1:d:10.1007_s13253-017-0315-4
    DOI: 10.1007/s13253-017-0315-4
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    References listed on IDEAS

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    1. Roger Pradel & Claire M. A. Wintrebert & Olivier Gimenez, 2003. "A Proposal for a Goodness-of-Fit Test to the Arnason-Schwarz Multisite Capture-Recapture Model," Biometrics, The International Biometric Society, vol. 59(1), pages 43-53, March.
    2. Fitsum Abadi & Andre Botha & Res Altwegg, 2013. "Revisiting the Effect of Capture Heterogeneity on Survival Estimates in Capture-Mark-Recapture Studies: Does It Matter?," PLOS ONE, Public Library of Science, vol. 8(4), pages 1-8, April.
    3. Oliver, Lauren J. & Morgan, Byron J.T. & Durant, Sarah M. & Pettorelli, Nathalie, 2011. "Individual heterogeneity in recapture probability and survival estimates in cheetah," Ecological Modelling, Elsevier, vol. 222(3), pages 776-784.
    4. Shirley Pledger & Kenneth H. Pollock & James L. Norris, 2003. "Open Capture-Recapture Models with Heterogeneity: I. Cormack-Jolly-Seber Model," Biometrics, The International Biometric Society, vol. 59(4), pages 786-794, December.
    5. B. J. T. Morgan & M. S. Ridout, 2008. "A new mixture model for capture heterogeneity," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 57(4), pages 433-446, September.
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