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Bayesian selection of best subsets via hybrid search

Author

Listed:
  • Shiqiang Jin

    (Kansas State University)

  • Gyuhyeong Goh

    (Kansas State University)

Abstract

Over the past decades, variable selection for high-dimensional data has drawn increasing attention. With a large number of predictors, there rises a big challenge for model fitting and prediction. In this paper, we develop a new Bayesian method of best subset selection using a hybrid search algorithm that combines a deterministic local search and a stochastic global search. To reduce the computational cost of evaluating multiple candidate subsets for each update, we propose a novel strategy that enables us to calculate exact marginal likelihoods of all neighbor models simultaneously in a single computation. In addition, we establish model selection consistency for the proposed method in the high-dimensional setting in which the number of possible predictors can increase faster than the sample size. Simulation study and real data analysis are conducted to investigate the performance of the proposed method.

Suggested Citation

  • Shiqiang Jin & Gyuhyeong Goh, 2021. "Bayesian selection of best subsets via hybrid search," Computational Statistics, Springer, vol. 36(3), pages 1991-2007, September.
  • Handle: RePEc:spr:compst:v:36:y:2021:i:3:d:10.1007_s00180-020-00996-y
    DOI: 10.1007/s00180-020-00996-y
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    References listed on IDEAS

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    1. Jiahua Chen & Zehua Chen, 2008. "Extended Bayesian information criteria for model selection with large model spaces," Biometrika, Biometrika Trust, vol. 95(3), pages 759-771.
    2. Faming Liang & Qifan Song & Kai Yu, 2013. "Bayesian Subset Modeling for High-Dimensional Generalized Linear Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(502), pages 589-606, June.
    3. Liang, Faming & Liu, Chuanhai & Carroll, Raymond J., 2007. "Stochastic Approximation in Monte Carlo Computation," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 305-320, March.
    4. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    5. Hans, Chris & Dobra, Adrian & West, Mike, 2007. "Shotgun Stochastic Search for," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 507-516, June.
    6. Gregory M. Findlay & Riza M. Daza & Beth Martin & Melissa D. Zhang & Anh P. Leith & Molly Gasperini & Joseph D. Janizek & Xingfan Huang & Lea M. Starita & Jay Shendure, 2018. "Accurate classification of BRCA1 variants with saturation genome editing," Nature, Nature, vol. 562(7726), pages 217-222, October.
    7. Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
    8. Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
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