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Random forest with acceptance–rejection trees

Author

Listed:
  • Peter Calhoun

    (Jaeb Center for Health Research)

  • Melodie J. Hallett

    (San Diego State University)

  • Xiaogang Su

    (University of Texas)

  • Guy Cafri

    (Johnson & Johnson Medical Devices)

  • Richard A. Levine

    (San Diego State University
    San Diego State University)

  • Juanjuan Fan

    (San Diego State University)

Abstract

In this paper, we propose a new random forest method based on completely randomized splitting rules with an acceptance–rejection criterion for quality control. We show how the proposed acceptance–rejection (AR) algorithm can outperform the standard random forest algorithm (RF) and some of its variants including extremely randomized (ER) trees and smooth sigmoid surrogate (SSS) trees. Twenty datasets were analyzed to compare prediction performance and a simulated dataset was used to assess variable selection bias. In terms of prediction accuracy for classification problems, the proposed AR algorithm performed the best, with ER being the second best. For regression problems, RF and SSS performed the best, followed by AR, and then ER at the last. However, each algorithm was most accurate for at least one study. We investigate scenarios where the AR algorithm can yield better predictive performance. In terms of variable importance, both RF and SSS demonstrated selection bias in favor of variables with many possible splits, while both ER and AR largely removed this bias.

Suggested Citation

  • Peter Calhoun & Melodie J. Hallett & Xiaogang Su & Guy Cafri & Richard A. Levine & Juanjuan Fan, 2020. "Random forest with acceptance–rejection trees," Computational Statistics, Springer, vol. 35(3), pages 983-999, September.
    • Handle: RePEc:spr:compst:v:35:y:2020:i:3:d:10.1007_s00180-019-00929-4
    DOI: 10.1007/s00180-019-00929-4
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    References listed on IDEAS

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    1. Ishwaran, Hemant & Kogalur, Udaya B. & Gorodeski, Eiran Z. & Minn, Andy J. & Lauer, Michael S., 2010. "High-Dimensional Variable Selection for Survival Data," Journal of the American Statistical Association, American Statistical Association, vol. 105(489), pages 205-217.
    2. Fan, Juanjuan & Su, Xiao-Gang & Levine, Richard A. & Nunn, Martha E. & LeBlanc, Michael, 2006. "Trees for Correlated Survival Data by Goodness of Split, With Applications to Tooth Prognosis," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 959-967, September.
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