IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0055809.html
   My bibliography  Save this article

Measuring Information-Transfer Delays

Author

Listed:
  • Michael Wibral
  • Nicolae Pampu
  • Viola Priesemann
  • Felix Siebenhühner
  • Hannes Seiwert
  • Michael Lindner
  • Joseph T Lizier
  • Raul Vicente

Abstract

In complex networks such as gene networks, traffic systems or brain circuits it is important to understand how long it takes for the different parts of the network to effectively influence one another. In the brain, for example, axonal delays between brain areas can amount to several tens of milliseconds, adding an intrinsic component to any timing-based processing of information. Inferring neural interaction delays is thus needed to interpret the information transfer revealed by any analysis of directed interactions across brain structures. However, a robust estimation of interaction delays from neural activity faces several challenges if modeling assumptions on interaction mechanisms are wrong or cannot be made. Here, we propose a robust estimator for neuronal interaction delays rooted in an information-theoretic framework, which allows a model-free exploration of interactions. In particular, we extend transfer entropy to account for delayed source-target interactions, while crucially retaining the conditioning on the embedded target state at the immediately previous time step. We prove that this particular extension is indeed guaranteed to identify interaction delays between two coupled systems and is the only relevant option in keeping with Wiener’s principle of causality. We demonstrate the performance of our approach in detecting interaction delays on finite data by numerical simulations of stochastic and deterministic processes, as well as on local field potential recordings. We also show the ability of the extended transfer entropy to detect the presence of multiple delays, as well as feedback loops. While evaluated on neuroscience data, we expect the estimator to be useful in other fields dealing with network dynamics.

Suggested Citation

  • Michael Wibral & Nicolae Pampu & Viola Priesemann & Felix Siebenhühner & Hannes Seiwert & Michael Lindner & Joseph T Lizier & Raul Vicente, 2013. "Measuring Information-Transfer Delays," PLOS ONE, Public Library of Science, vol. 8(2), pages 1-19, February.
  • Handle: RePEc:plo:pone00:0055809
    DOI: 10.1371/journal.pone.0055809
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0055809
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0055809&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0055809?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. J. T. Lizier & M. Prokopenko, 2010. "Differentiating information transfer and causal effect," The European Physical Journal B: Condensed Matter and Complex Systems, Springer;EDP Sciences, vol. 73(4), pages 605-615, February.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Coulibaly, Saliya & Bessin, Florent & Clerc, Marcel G. & Mussot, Arnaud, 2022. "Precursors-driven machine learning prediction of chaotic extreme pulses in Kerr resonators," Chaos, Solitons & Fractals, Elsevier, vol. 160(C).
    2. Xiaogeng Wan & Lanxi Xu, 2018. "A study for multiscale information transfer measures based on conditional mutual information," PLOS ONE, Public Library of Science, vol. 13(12), pages 1-30, December.
    3. Daniel Toker & Friedrich T Sommer, 2019. "Information integration in large brain networks," PLOS Computational Biology, Public Library of Science, vol. 15(2), pages 1-26, February.
    4. David L Gibbs & Ilya Shmulevich, 2017. "Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle," PLOS Computational Biology, Public Library of Science, vol. 13(6), pages 1-19, June.
    5. Libor Pekař & Radek Matušů & Roman Prokop, 2017. "Gridding discretization-based multiple stability switching delay search algorithm: The movement of a human being on a controlled swaying bow," PLOS ONE, Public Library of Science, vol. 12(6), pages 1-23, June.
    6. Shinya Ito & Fang-Chin Yeh & Emma Hiolski & Przemyslaw Rydygier & Deborah E Gunning & Pawel Hottowy & Nicholas Timme & Alan M Litke & John M Beggs, 2014. "Large-Scale, High-Resolution Multielectrode-Array Recording Depicts Functional Network Differences of Cortical and Hippocampal Cultures," PLOS ONE, Public Library of Science, vol. 9(8), pages 1-16, August.
    7. Nicholas Timme & Shinya Ito & Maxym Myroshnychenko & Fang-Chin Yeh & Emma Hiolski & Pawel Hottowy & John M Beggs, 2014. "Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales," PLOS ONE, Public Library of Science, vol. 9(12), pages 1-43, December.
    8. Leonidas Sandoval Junior & Asher Mullokandov & Dror Y. Kenett, 2015. "Dependency Relations among International Stock Market Indices," JRFM, MDPI, vol. 8(2), pages 1-39, May.
    9. Sourabh Lahiri & Philippe Nghe & Sander J Tans & Martin Luc Rosinberg & David Lacoste, 2017. "Information-theoretic analysis of the directional influence between cellular processes," PLOS ONE, Public Library of Science, vol. 12(11), pages 1-26, November.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Wu, Zhe & Zhang, Qiang & Cheng, Lifeng & Hou, Shuyong & Tan, Shengyue, 2020. "The VMTES: Application to the structural health monitoring and diagnosis of rotating machines," Renewable Energy, Elsevier, vol. 162(C), pages 2380-2396.
    2. Xiaogeng Wan & Lanxi Xu, 2018. "A study for multiscale information transfer measures based on conditional mutual information," PLOS ONE, Public Library of Science, vol. 13(12), pages 1-30, December.
    3. Wu, Zhenyu & Shang, Pengjian, 2017. "Nonlinear transformation on the transfer entropy of financial time series," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 482(C), pages 392-400.
    4. Zanin, Massimiliano & Papo, David, 2020. "Assessing functional propagation patterns in COVID-19," Chaos, Solitons & Fractals, Elsevier, vol. 138(C).
    5. Terry Bossomaier & Lionel Barnett & Adam Steen & Mike Harré & Steve d'Alessandro & Rod Duncan, 2018. "Information flow around stock market collapse," Accounting and Finance, Accounting and Finance Association of Australia and New Zealand, vol. 58(S1), pages 45-58, November.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0055809. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.