SPPS: A Sequence-Based Method for Predicting Probability of Protein-Protein Interaction Partners
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0030938
Download full text from publisher
References listed on IDEAS
- Evangelia Petsalaki & Alexander Stark & Eduardo García-Urdiales & Robert B Russell, 2009. "Accurate Prediction of Peptide Binding Sites on Protein Surfaces," PLOS Computational Biology, Public Library of Science, vol. 5(3), pages 1-10, March.
- Aaron Clauset & Cristopher Moore & M. E. J. Newman, 2008. "Hierarchical structure and the prediction of missing links in networks," Nature, Nature, vol. 453(7191), pages 98-101, May.
- Benjamin A Shoemaker & Anna R Panchenko, 2007. "Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners," PLOS Computational Biology, Public Library of Science, vol. 3(4), pages 1-7, April.
- Doron Betel & Kevin E Breitkreuz & Ruth Isserlin & Danielle Dewar-Darch & Mike Tyers & Christopher W V Hogue, 2007. "Structure-Templated Predictions of Novel Protein Interactions from Sequence Information," PLOS Computational Biology, Public Library of Science, vol. 3(9), pages 1-7, September.
- Vishwanath R. Iyer & Christine E. Horak & Charles S. Scafe & David Botstein & Michael Snyder & Patrick O. Brown, 2001. "Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF," Nature, Nature, vol. 409(6819), pages 533-538, January.
- Bálint Mészáros & István Simon & Zsuzsanna Dosztányi, 2009. "Prediction of Protein Binding Regions in Disordered Proteins," PLOS Computational Biology, Public Library of Science, vol. 5(5), pages 1-18, May.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Guilherme T Valente & Marcio L Acencio & Cesar Martins & Ney Lemke, 2013. "The Development of a Universal In Silico Predictor of Protein-Protein Interactions," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-11, May.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Saket Navlakha & Anthony Gitter & Ziv Bar-Joseph, 2012. "A Network-based Approach for Predicting Missing Pathway Interactions," PLOS Computational Biology, Public Library of Science, vol. 8(8), pages 1-13, August.
- Yao Hongxing & Lu Yunxia, 2017. "Analyzing the Potential Influence of Shanghai Stock Market Based on Link Prediction Method," Journal of Systems Science and Information, De Gruyter, vol. 5(5), pages 446-461, October.
- Gergely Tibély & David Sousa-Rodrigues & Péter Pollner & Gergely Palla, 2016. "Comparing the Hierarchy of Keywords in On-Line News Portals," PLOS ONE, Public Library of Science, vol. 11(11), pages 1-15, November.
- Ding, Ying, 2011. "Community detection: Topological vs. topical," Journal of Informetrics, Elsevier, vol. 5(4), pages 498-514.
- Gräbner, Claudius, 2016. "From realism to instrumentalism - and back? Methodological implications of changes in the epistemology of economics," MPRA Paper 71933, University Library of Munich, Germany.
- John E Reid & Lorenz Wernisch, 2014. "STEME: A Robust, Accurate Motif Finder for Large Data Sets," PLOS ONE, Public Library of Science, vol. 9(3), pages 1-11, March.
- Liu, Chuang & Zhou, Wei-Xing, 2012. "Heterogeneity in initial resource configurations improves a network-based hybrid recommendation algorithm," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(22), pages 5704-5711.
- Tamás Nepusz & Tamás Vicsek, 2013. "Hierarchical Self-Organization of Non-Cooperating Individuals," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-9, December.
- Xia, Yongxiang & Pang, Wenbo & Zhang, Xuejun, 2021. "Mining relationships between performance of link prediction algorithms and network structure," Chaos, Solitons & Fractals, Elsevier, vol. 153(P2).
- Nora Connor & Albert Barberán & Aaron Clauset, 2017. "Using null models to infer microbial co-occurrence networks," PLOS ONE, Public Library of Science, vol. 12(5), pages 1-23, May.
- Aslan, Serpil & Kaya, Buket & Kaya, Mehmet, 2019. "Predicting potential links by using strengthened projections in evolving bipartite networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 525(C), pages 998-1011.
- Leto Peel & Tiago P. Peixoto & Manlio De Domenico, 2022. "Statistical inference links data and theory in network science," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Rosanna Grassi & Paolo Bartesaghi & Stefano Benati & Gian Paolo Clemente, 2021. "Multi-Attribute Community Detection in International Trade Network," Networks and Spatial Economics, Springer, vol. 21(3), pages 707-733, September.
- Amulyashree Sridhar & Sharvani GS & AH Manjunatha Reddy & Biplab Bhattacharjee & Kalyan Nagaraj, 2019. "The Eminence of Co-Expressed Ties in Schizophrenia Network Communities," Data, MDPI, vol. 4(4), pages 1-23, November.
- Li, Qing & Zhang, Huaige & Hong, Xianpei, 2020. "Knowledge structure of technology licensing based on co-keywords network: A review and future directions," International Review of Economics & Finance, Elsevier, vol. 66(C), pages 154-165.
- Wang, Zuxi & Wu, Yao & Li, Qingguang & Jin, Fengdong & Xiong, Wei, 2016. "Link prediction based on hyperbolic mapping with community structure for complex networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 450(C), pages 609-623.
- Lee, Yan-Li & Zhou, Tao, 2021. "Collaborative filtering approach to link prediction," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 578(C).
- Thorben Funke & Till Becker, 2019. "Stochastic block models: A comparison of variants and inference methods," PLOS ONE, Public Library of Science, vol. 14(4), pages 1-40, April.
- Kan, Kees-Jan & van der Maas, Han L.J. & Levine, Stephen Z., 2019. "Extending psychometric network analysis: Empirical evidence against g in favor of mutualism?," Intelligence, Elsevier, vol. 73(C), pages 52-62.
- Shang, Ke-ke & Small, Michael & Yan, Wei-sheng, 2017. "Link direction for link prediction," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 469(C), pages 767-776.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0030938. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.