The effects of introgression across thousands of quantitative traits revealed by gene expression in wild tomatoes
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pgen.1009892
Download full text from publisher
References listed on IDEAS
- Kevin J Liu & Jingxuan Dai & Kathy Truong & Ying Song & Michael H Kohn & Luay Nakhleh, 2014. "An HMM-Based Comparative Genomic Framework for Detecting Introgression in Eukaryotes," PLOS Computational Biology, Public Library of Science, vol. 10(6), pages 1-13, June.
- Sriram Sankararaman & Swapan Mallick & Michael Dannemann & Kay Prüfer & Janet Kelso & Svante Pääbo & Nick Patterson & David Reich, 2014. "The genomic landscape of Neanderthal ancestry in present-day humans," Nature, Nature, vol. 507(7492), pages 354-357, March.
- David Reich & Kumarasamy Thangaraj & Nick Patterson & Alkes L. Price & Lalji Singh, 2009. "Reconstructing Indian population history," Nature, Nature, vol. 461(7263), pages 489-494, September.
- Meng, Chen & Kubatko, Laura Salter, 2009. "Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model," Theoretical Population Biology, Elsevier, vol. 75(1), pages 35-45.
- David Brawand & Magali Soumillon & Anamaria Necsulea & Philippe Julien & Gábor Csárdi & Patrick Harrigan & Manuela Weier & Angélica Liechti & Ayinuer Aximu-Petri & Martin Kircher & Frank W. Albert & U, 2011. "The evolution of gene expression levels in mammalian organs," Nature, Nature, vol. 478(7369), pages 343-348, October.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Leonardo Vallini & Carlo Zampieri & Mohamed Javad Shoaee & Eugenio Bortolini & Giulia Marciani & Serena Aneli & Telmo Pievani & Stefano Benazzi & Alberto Barausse & Massimo Mezzavilla & Michael D. Pet, 2024. "The Persian plateau served as hub for Homo sapiens after the main out of Africa dispersal," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Gyaneshwer Chaubey & Anurag Kadian & Saroj Bala & Vadlamudi Raghavendra Rao, 2015. "Genetic Affinity of the Bhil, Kol and Gond Mentioned in Epic Ramayana," PLOS ONE, Public Library of Science, vol. 10(6), pages 1-11, June.
- Michael Bridges & Elizabeth A Heron & Colm O'Dushlaine & Ricardo Segurado & The International Schizophrenia Consortium (ISC) & Derek Morris & Aiden Corvin & Michael Gill & Carlos Pinto, 2011. "Genetic Classification of Populations Using Supervised Learning," PLOS ONE, Public Library of Science, vol. 6(5), pages 1-12, May.
- Kai Yuan & Xumin Ni & Chang Liu & Yuwen Pan & Lian Deng & Rui Zhang & Yang Gao & Xueling Ge & Jiaojiao Liu & Xixian Ma & Haiyi Lou & Taoyang Wu & Shuhua Xu, 2021. "Refining models of archaic admixture in Eurasia with ArchaicSeeker 2.0," Nature Communications, Nature, vol. 12(1), pages 1-15, December.
- Kay Young McChesney, 2015. "Teaching Diversity," SAGE Open, , vol. 5(4), pages 21582440156, October.
- Nicola F. Müller & Kathryn E. Kistler & Trevor Bedford, 2022. "A Bayesian approach to infer recombination patterns in coronaviruses," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
- Joshua G Schraiber & Yulia Mostovoy & Tiffany Y Hsu & Rachel B Brem, 2013. "Inferring Evolutionary Histories of Pathway Regulation from Transcriptional Profiling Data," PLOS Computational Biology, Public Library of Science, vol. 9(10), pages 1-13, October.
- Jin Woo Oh & Michael A. Beer, 2024. "Gapped-kmer sequence modeling robustly identifies regulatory vocabularies and distal enhancers conserved between evolutionarily distant mammals," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Rozaimi Mohamad Razali & Juan Rodriguez-Flores & Mohammadmersad Ghorbani & Haroon Naeem & Waleed Aamer & Elbay Aliyev & Ali Jubran & Andrew G. Clark & Khalid A. Fakhro & Younes Mokrab, 2021. "Thousands of Qatari genomes inform human migration history and improve imputation of Arab haplotypes," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
- David B. Stern & Nathan W. Anderson & Juanita A. Diaz & Carol Eunmi Lee, 2022. "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- S Justin Carlus & Saumya Sarkar & Sandeep Kumar Bansal & Vertika Singh & Kiran Singh & Rajesh Kumar Jha & Nirmala Sadasivam & Sri Revathy Sadasivam & P S Gireesha & Kumarasamy Thangaraj & Singh Rajend, 2016. "Is MTHFR 677 C>T Polymorphism Clinically Important in Polycystic Ovarian Syndrome (PCOS)? A Case-Control Study, Meta-Analysis and Trial Sequential Analysis," PLOS ONE, Public Library of Science, vol. 11(3), pages 1-15, March.
- Paola Cornejo-Páramo & Veronika Petrova & Xuan Zhang & Robert S. Young & Emily S. Wong, 2024. "Emergence of enhancers at late DNA replicating regions," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Jasper Panten & Tobias Heinen & Christina Ernst & Nils Eling & Rebecca E. Wagner & Maja Satorius & John C. Marioni & Oliver Stegle & Duncan T. Odom, 2024. "The dynamic genetic determinants of increased transcriptional divergence in spermatids," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Zhijun Wu & Yuqing Lou & Wei Jin & Yan Liu & Lin Lu & Guoping Lu, 2012. "The Pro12Ala Polymorphism in the Peroxisome Proliferator-Activated Receptor Gamma-2 Gene (PPARγ2) Is Associated with Increased Risk of Coronary Artery Disease: A Meta-Analysis," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-14, December.
- Buzbas, Erkan Ozge & Verdu, Paul, 2018. "Inference on admixture fractions in a mechanistic model of recurrent admixture," Theoretical Population Biology, Elsevier, vol. 122(C), pages 149-157.
- Gunjan Sharma & Rakesh Tamang & Ruchira Chaudhary & Vipin Kumar Singh & Anish M Shah & Sharath Anugula & Deepa Selvi Rani & Alla G Reddy & Muthukrishnan Eaaswarkhanth & Gyaneshwer Chaubey & Lalji Sing, 2012. "Genetic Affinities of the Central Indian Tribal Populations," PLOS ONE, Public Library of Science, vol. 7(2), pages 1-8, February.
- David Gordon & Shailen Nandy, 2016. "The Extent, Nature and Distribution of Child Poverty in India," Indian Journal of Human Development, , vol. 10(1), pages 64-84, April.
- Jeffrey D. Wall & J. Fah Sathirapongsasuti & Ravi Gupta & Asif Rasheed & Radha Venkatesan & Saurabh Belsare & Ramesh Menon & Sameer Phalke & Anuradha Mittal & John Fang & Deepak Tanneeru & Manjari Des, 2023. "South Asian medical cohorts reveal strong founder effects and high rates of homozygosity," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
- Russell Corbett-Detig & Rasmus Nielsen, 2017. "A Hidden Markov Model Approach for Simultaneously Estimating Local Ancestry and Admixture Time Using Next Generation Sequence Data in Samples of Arbitrary Ploidy," PLOS Genetics, Public Library of Science, vol. 13(1), pages 1-40, January.
- Orshay Gabay & Yoav Shoshan & Eli Kopel & Udi Ben-Zvi & Tomer D. Mann & Noam Bressler & Roni Cohen‐Fultheim & Amos A. Schaffer & Shalom Hillel Roth & Ziv Tzur & Erez Y. Levanon & Eli Eisenberg, 2022. "Landscape of adenosine-to-inosine RNA recoding across human tissues," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pgen00:1009892. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosgenetics (email available below). General contact details of provider: https://journals.plos.org/plosgenetics/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.