SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions
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DOI: 10.1371/journal.pcbi.1006616
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- U Martin Singh-Blom & Nagarajan Natarajan & Ambuj Tewari & John O Woods & Inderjit S Dhillon & Edward M Marcotte, 2013. "Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-17, May.
- Yunan Luo & Xinbin Zhao & Jingtian Zhou & Jinglin Yang & Yanqing Zhang & Wenhua Kuang & Jian Peng & Ligong Chen & Jianyang Zeng, 2017. "A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information," Nature Communications, Nature, vol. 8(1), pages 1-13, December.
- Yue-Ping Liu & Hai-Yan Wu & Xiang Yang & Han-Qing Xu & Yong-Chuan Li & Da-Chuan Shi & Jun-Fu Huang & Qing Huang & Wei-Ling Fu, 2015. "Association between Thiopurine S-methyltransferase Polymorphisms and Thiopurine-Induced Adverse Drug Reactions in Patients with Inflammatory Bowel Disease: A Meta-Analysis," PLOS ONE, Public Library of Science, vol. 10(3), pages 1-12, March.
- Longqiang Luo & Dingfang Li & Wen Zhang & Shikui Tu & Xiaopeng Zhu & Gang Tian, 2016. "Accurate Prediction of Transposon-Derived piRNAs by Integrating Various Sequential and Physicochemical Features," PLOS ONE, Public Library of Science, vol. 11(4), pages 1-13, April.
- Wen Zhang & Yanqing Niu & Hua Zou & Longqiang Luo & Qianchao Liu & Weijian Wu, 2015. "Accurate Prediction of Immunogenic T-Cell Epitopes from Epitope Sequences Using the Genetic Algorithm-Based Ensemble Learning," PLOS ONE, Public Library of Science, vol. 10(5), pages 1-14, May.
- Wen Zhang & Yanqing Niu & Yi Xiong & Meng Zhao & Rongwei Yu & Juan Liu, 2012. "Computational Prediction of Conformational B-Cell Epitopes from Antigen Primary Structures by Ensemble Learning," PLOS ONE, Public Library of Science, vol. 7(8), pages 1-9, August.
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