IDEAS home Printed from https://ideas.repec.org/a/plo/pcbi00/1005838.html
   My bibliography  Save this article

fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks

Author

Listed:
  • Edwin van Leeuwen
  • Petra Klepac
  • Dominic Thorrington
  • Richard Pebody
  • Marc Baguelin

Abstract

Public health related decisions often have to balance the cost of intervention strategies with the benefit of the reduction in disease burden. While the cost can often be inferred, forward modelling of the effect of different intervention options is complicated and disease specific. Here we introduce a package that is aimed to simplify this process. The package allows one to infer parameters using a Bayesian approach, perform forward modelling of the likely results of the proposed intervention and finally perform cost effectiveness analysis of the results. The package is based on a method previously used in the United Kingdom to inform vaccination strategies for influenza, with extensions to make it easily adaptable to other diseases and data sources.

Suggested Citation

  • Edwin van Leeuwen & Petra Klepac & Dominic Thorrington & Richard Pebody & Marc Baguelin, 2017. "fluEvidenceSynthesis: An R package for evidence synthesis based analysis of epidemiological outbreaks," PLOS Computational Biology, Public Library of Science, vol. 13(11), pages 1-12, November.
    • Handle: RePEc:plo:pcbi00:1005838
    DOI: 10.1371/journal.pcbi.1005838
    as

    Download full text from publisher

    File URL: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005838
    Download Restriction: no
    File URL: https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005838&type=printable
    Download Restriction: no
    File URL: https://libkey.io/10.1371/journal.pcbi.1005838?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Dureau, Joseph & Kalogeropoulos, Konstantinos & Baguelin, Marc, 2013. "Capturing the time-varying drivers of an epidemic using stochastic dynamical systems," LSE Research Online Documents on Economics 41749, London School of Economics and Political Science, LSE Library.
    2. Merl, Daniel & Johnson, Leah R. & Gramacy, Robert B. & Mangel, Marc, 2010. "amei: An R Package for the Adaptive Management of Epidemiological Interventions," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 36(i06).
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Harrison Hong & Neng Wang & Jinqiang Yang, 2020. "Implications of Stochastic Transmission Rates for Managing Pandemic Risks," NBER Working Papers 27218, National Bureau of Economic Research, Inc.
    2. Gourieroux, C. & Jasiak, J., 2023. "Time varying Markov process with partially observed aggregate data: An application to coronavirus," Journal of Econometrics, Elsevier, vol. 232(1), pages 35-51.
    3. Guenette,Justin Damien & Yamazaki,Takefumi, 2021. "Projecting the Economic Consequences of the COVID-19 Pandemic," Policy Research Working Paper Series 9589, The World Bank.
    4. Meyer, Sebastian & Held, Leonhard & Höhle, Michael, 2017. "Spatio-Temporal Analysis of Epidemic Phenomena Using the R Package surveillance," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 77(i11).
    5. Păcurar, Cristina-Maria & Necula, Bogdan-Radu, 2020. "An analysis of COVID-19 spread based on fractal interpolation and fractal dimension," Chaos, Solitons & Fractals, Elsevier, vol. 139(C).
    6. Spooner, Fiona & Abrams, Jesse F. & Morrissey, Karyn & Shaddick, Gavin & Batty, Michael & Milton, Richard & Dennett, Adam & Lomax, Nik & Malleson, Nick & Nelissen, Natalie & Coleman, Alex & Nur, Jamil, 2021. "A dynamic microsimulation model for epidemics," Social Science & Medicine, Elsevier, vol. 291(C).

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1005838. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.