IDEAS home Printed from https://ideas.repec.org/a/plo/pcbi00/1003552.html
   My bibliography  Save this article

Coupling of Lever Arm Swing and Biased Brownian Motion in Actomyosin

Author

Listed:
  • Qing-Miao Nie
  • Akio Togashi
  • Takeshi N Sasaki
  • Mitsunori Takano
  • Masaki Sasai
  • Tomoki P Terada

Abstract

An important unresolved problem associated with actomyosin motors is the role of Brownian motion in the process of force generation. On the basis of structural observations of myosins and actins, the widely held lever-arm hypothesis has been proposed, in which proteins are assumed to show sequential structural changes among observed and hypothesized structures to exert mechanical force. An alternative hypothesis, the Brownian motion hypothesis, has been supported by single-molecule experiments and emphasizes more on the roles of fluctuating protein movement. In this study, we address the long-standing controversy between the lever-arm hypothesis and the Brownian motion hypothesis through in silico observations of an actomyosin system. We study a system composed of myosin II and actin filament by calculating free-energy landscapes of actin-myosin interactions using the molecular dynamics method and by simulating transitions among dynamically changing free-energy landscapes using the Monte Carlo method. The results obtained by this combined multi-scale calculation show that myosin with inorganic phosphate (Pi) and ADP weakly binds to actin and that after releasing Pi and ADP, myosin moves along the actin filament toward the strong-binding site by exhibiting the biased Brownian motion, a behavior consistent with the observed single-molecular behavior of myosin. Conformational flexibility of loops at the actin-interface of myosin and the N-terminus of actin subunit is necessary for the distinct bias in the Brownian motion. Both the 5.5–11 nm displacement due to the biased Brownian motion and the 3–5 nm displacement due to lever-arm swing contribute to the net displacement of myosin. The calculated results further suggest that the recovery stroke of the lever arm plays an important role in enhancing the displacement of myosin through multiple cycles of ATP hydrolysis, suggesting a unified movement mechanism for various members of the myosin family.Author Summary: Myosin II is a molecular motor that is fueled by ATP hydrolysis and generates mechanical force by interacting with actin filament. Comparison among various myosin structures obtained by X-ray and electron microscope analyses has led to the hypothesis that structural change of myosin in ATP hydrolysis cycle is the driving mechanism of force generation. However, single-molecule experiments have suggested an alternative mechanism in which myosin moves stochastically in a biased direction along actin filament. Computer simulation serves as a platform for assessing these hypotheses by revealing the prominent features of the dynamically changing landscape of actin-myosin interaction. The calculated results show that myosin binds to actin at different locations of actin filament in the weak- and strong-binding states and that the free energy has a global gradient from the weak-binding site to the strong-binding site. Myosin relaxing into the strong-binding state therefore necessarily shows the biased Brownian motion toward the strong-binding site. Lever-arm swing is induced during this relaxation process; therefore, lever-arm swing and the biased Brownian motion are coupled to contribute to the net displacement of myosin. This coupling should affect the dynamical behaviors of muscle and cardiac systems.

Suggested Citation

  • Qing-Miao Nie & Akio Togashi & Takeshi N Sasaki & Mitsunori Takano & Masaki Sasai & Tomoki P Terada, 2014. "Coupling of Lever Arm Swing and Biased Brownian Motion in Actomyosin," PLOS Computational Biology, Public Library of Science, vol. 10(4), pages 1-13, April.
  • Handle: RePEc:plo:pcbi00:1003552
    DOI: 10.1371/journal.pcbi.1003552
    as

    Download full text from publisher

    File URL: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003552
    Download Restriction: no

    File URL: https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003552&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pcbi.1003552?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Kazuo Kitamura & Makio Tokunaga & Atsuko Hikikoshi Iwane & Toshio Yanagida, 1999. "A single myosin head moves along an actin filament with regular steps of 5.3 nanometres," Nature, Nature, vol. 397(6715), pages 129-134, January.
    2. Kenneth C. Holmes & Isabel Angert & F. Jon Kull & Werner Jahn & Rasmus R. Schröder, 2003. "Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide," Nature, Nature, vol. 425(6956), pages 423-427, September.
    3. Toshiro Oda & Mitsusada Iwasa & Tomoki Aihara & Yuichiro Maéda & Akihiro Narita, 2009. "The nature of the globular- to fibrous-actin transition," Nature, Nature, vol. 457(7228), pages 441-445, January.
    4. Noriyuki Kodera & Daisuke Yamamoto & Ryoki Ishikawa & Toshio Ando, 2010. "Video imaging of walking myosin V by high-speed atomic force microscopy," Nature, Nature, vol. 468(7320), pages 72-76, November.
    5. Keisuke Fujita & Mitsuhiro Iwaki & Atsuko H. Iwane & Lorenzo Marcucci & Toshio Yanagida, 2012. "Switching of myosin-V motion between the lever-arm swing and Brownian search-and-catch," Nature Communications, Nature, vol. 3(1), pages 1-9, January.
    6. Michael A. Geeves, 2002. "Stretching the lever-arm theory," Nature, Nature, vol. 415(6868), pages 129-131, January.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Rong Zhu & Daniel Canena & Mateusz Sikora & Miriam Klausberger & Hannah Seferovic & Ahmad Reza Mehdipour & Lisa Hain & Elisabeth Laurent & Vanessa Monteil & Gerald Wirnsberger & Ralph Wieneke & Robert, 2022. "Force-tuned avidity of spike variant-ACE2 interactions viewed on the single-molecule level," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    2. Fang Jiao & François Dehez & Tao Ni & Xiulian Yu & Jeremy S. Dittman & Robert Gilbert & Christophe Chipot & Simon Scheuring, 2022. "Perforin-2 clockwise hand-over-hand pre-pore to pore transition mechanism," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    3. Chou, Y.C., 2019. "Dynamical mechanism of stepping of the molecular motor myosin V along actin filament and simulation in an actual system," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 521(C), pages 399-405.
    4. Micaela Boiero Sanders & Wout Oosterheert & Oliver Hofnagel & Peter Bieling & Stefan Raunser, 2024. "Phalloidin and DNase I-bound F-actin pointed end structures reveal principles of filament stabilization and disassembly," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    5. Lorenzo Marcucci & Takumi Washio & Toshio Yanagida, 2016. "Including Thermal Fluctuations in Actomyosin Stable States Increases the Predicted Force per Motor and Macroscopic Efficiency in Muscle Modelling," PLOS Computational Biology, Public Library of Science, vol. 12(9), pages 1-20, September.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1003552. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.