Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies
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Abstract
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DOI: 10.1371/journal.pcbi.1000605
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References listed on IDEAS
- Holly J Atkinson & John H Morris & Thomas E Ferrin & Patricia C Babbitt, 2009. "Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies," PLOS ONE, Public Library of Science, vol. 4(2), pages 1-14, February.
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Cited by:
- Rui Fa & Domenico Cozzetto & Cen Wan & David T Jones, 2018. "Predicting human protein function with multi-task deep neural networks," PLOS ONE, Public Library of Science, vol. 13(6), pages 1-16, June.
- Elisa Boari de Lima & Wagner Meira Júnior & Raquel Cardoso de Melo-Minardi, 2016. "Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering," PLOS Computational Biology, Public Library of Science, vol. 12(6), pages 1-32, June.
- Michal Brylinski & Daswanth Lingam, 2012. "eThread: A Highly Optimized Machine Learning-Based Approach to Meta-Threading and the Modeling of Protein Tertiary Structures," PLOS ONE, Public Library of Science, vol. 7(11), pages 1-12, November.
- Akira R Kinjo & Haruki Nakamura, 2012. "Composite Structural Motifs of Binding Sites for Delineating Biological Functions of Proteins," PLOS ONE, Public Library of Science, vol. 7(2), pages 1-11, February.
- Matthew N Benedict & Michael B Mundy & Christopher S Henry & Nicholas Chia & Nathan D Price, 2014. "Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models," PLOS Computational Biology, Public Library of Science, vol. 10(10), pages 1-14, October.
- Thomas J Sharpton & Samantha J Riesenfeld & Steven W Kembel & Joshua Ladau & James P O'Dwyer & Jessica L Green & Jonathan A Eisen & Katherine S Pollard, 2011. "PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data," PLOS Computational Biology, Public Library of Science, vol. 7(1), pages 1-13, January.
- Yuval Bussi & Ruti Kapon & Ziv Reich, 2021. "Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy," PLOS ONE, Public Library of Science, vol. 16(10), pages 1-27, October.
- Wing-Cheong Wong & Sebastian Maurer-Stroh & Frank Eisenhaber, 2010. "More Than 1,001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology," PLOS Computational Biology, Public Library of Science, vol. 6(7), pages 1-19, July.
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