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Broad phylogenomic sampling improves resolution of the animal tree of life

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  • Casey W. Dunn

    (Kewalo Marine Laboratory, PBRC, University of Hawaii, 41 Ahui Street, Honolulu, Hawaii 96813, USA
    Present address: Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman Street, Providence, Rhode Island 02912, USA.)

  • Andreas Hejnol

    (Kewalo Marine Laboratory, PBRC, University of Hawaii, 41 Ahui Street, Honolulu, Hawaii 96813, USA)

  • David Q. Matus

    (Kewalo Marine Laboratory, PBRC, University of Hawaii, 41 Ahui Street, Honolulu, Hawaii 96813, USA)

  • Kevin Pang

    (Kewalo Marine Laboratory, PBRC, University of Hawaii, 41 Ahui Street, Honolulu, Hawaii 96813, USA)

  • William E. Browne

    (Kewalo Marine Laboratory, PBRC, University of Hawaii, 41 Ahui Street, Honolulu, Hawaii 96813, USA)

  • Stephen A. Smith

    (Yale University, PO Box 208105, New Haven, Connecticut 06520, USA)

  • Elaine Seaver

    (Kewalo Marine Laboratory, PBRC, University of Hawaii, 41 Ahui Street, Honolulu, Hawaii 96813, USA)

  • Greg W. Rouse

    (Scripps Institution of Oceanography, University of California San Diego, 9500 Gilman Drive 0202, La Jolla, California 92093, USA)

  • Matthias Obst

    (Kristineberg Marine Research Station, Kristineberg 566, 450 34 Fiskebäckskil, Sweden)

  • Gregory D. Edgecombe

    (The Natural History Museum, Cromwell Road, London SW7 5BD, UK)

  • Martin V. Sørensen

    (Ancient DNA and Evolution Group, Biological Institute, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark)

  • Steven H. D. Haddock

    (Monterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, California 95039, USA)

  • Andreas Schmidt-Rhaesa

    (Zoological Museum, University of Hamburg, Martin-Luther-King-Platz 3, 20146 Hamburg, Germany)

  • Akiko Okusu

    (Simmons College, The Fenway, Boston, Massachusetts 02115, USA)

  • Reinhardt Møbjerg Kristensen

    (Zoological Museum, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark)

  • Ward C. Wheeler

    (American Museum of Natural History, Central Park West at 79th Street, New York, New York 10024, USA)

  • Mark Q. Martindale

    (Kewalo Marine Laboratory, PBRC, University of Hawaii, 41 Ahui Street, Honolulu, Hawaii 96813, USA)

  • Gonzalo Giribet

    (Department of Organismic and Evolutionary Biology,
    Museum of Comparative Zoology, Harvard University, 26 Oxford Street, Cambridge, Massachusetts 02138, USA)

Abstract

Improved relations The accumulation of molecular data is reshaping our understanding of the evolutionary relationships between the major groups of animals. Early work in the field relied upon data from a small number of genes, but the availability of fully sequenced genomes and expressed sequence tags (ESTs, short sub-sequences obtained from large numbers of complementary DNA clones), means that huge swathes of the animal kingdom can now be subjected to such analysis. A new study describes and discusses almost 40 megabases-worth of ESTs from animals of 21 phyla, including 11 animals for which no genomic or EST data were previously available. The conclusions confirm ideas long established by anatomy, including the monophyletic nature of the molluscs, deriving from a common ancestor despite their remarkable variety. New and interesting evolutionary relationships are also uncovered, including a single origin for spiral cleavage of the early embryo. The cover illustrates animal diversity, including acorn, ribbon, arrow and velvet worms, jellyfish and sea spider.

Suggested Citation

  • Casey W. Dunn & Andreas Hejnol & David Q. Matus & Kevin Pang & William E. Browne & Stephen A. Smith & Elaine Seaver & Greg W. Rouse & Matthias Obst & Gregory D. Edgecombe & Martin V. Sørensen & Steven, 2008. "Broad phylogenomic sampling improves resolution of the animal tree of life," Nature, Nature, vol. 452(7188), pages 745-749, April.
    • Handle: RePEc:nat:nature:v:452:y:2008:i:7188:d:10.1038_nature06614
    DOI: 10.1038/nature06614
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    Cited by:

    1. Maria E Gallegos & Sanjeev Balakrishnan & Priya Chandramouli & Shaily Arora & Aruna Azameera & Anitha Babushekar & Emilee Bargoma & Abdulmalik Bokhari & Siva Kumari Chava & Pranti Das & Meetali Desai , 2012. "The C. elegans Rab Family: Identification, Classification and Toolkit Construction," PLOS ONE, Public Library of Science, vol. 7(11), pages 1-19, November.
    2. Emese Meglécz & Gabriel Nève & Ed Biffin & Michael G Gardner, 2012. "Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-15, July.
    3. Bryan Korithoski & Oralia Kolaczkowski & Krishanu Mukherjee & Reema Kola & Chandra Earl & Bryan Kolaczkowski, 2015. "Evolution of a Novel Antiviral Immune-Signaling Interaction by Partial-Gene Duplication," PLOS ONE, Public Library of Science, vol. 10(9), pages 1-26, September.
    4. Helen E. Robertson & Arnau Sebé-Pedrós & Baptiste Saudemont & Yann Loe-Mie & Anne-C. Zakrzewski & Xavier Grau-Bové & Marie-Pierre Mailhe & Philipp Schiffer & Maximilian J. Telford & Heather Marlow, 2024. "Single cell atlas of Xenoturbella bocki highlights limited cell-type complexity," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    5. Julie D Thompson & Benjamin Linard & Odile Lecompte & Olivier Poch, 2011. "A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives," PLOS ONE, Public Library of Science, vol. 6(3), pages 1-14, March.
    6. M Antonio Todaro & Tobias Kånneby & Matteo Dal Zotto & Ulf Jondelius, 2011. "Phylogeny of Thaumastodermatidae (Gastrotricha: Macrodasyida) Inferred from Nuclear and Mitochondrial Sequence Data," PLOS ONE, Public Library of Science, vol. 6(3), pages 1-13, March.
    7. Matthew Goulty & Gaelle Botton-Amiot & Ezio Rosato & Simon G. Sprecher & Roberto Feuda, 2023. "The monoaminergic system is a bilaterian innovation," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    8. Lauren E. Vandepas & Caroline Stefani & Phillip P. Domeier & Nikki Traylor-Knowles & Frederick W. Goetz & William E. Browne & Adam Lacy-Hulbert, 2024. "Extracellular DNA traps in a ctenophore demonstrate immune cell behaviors in a non-bilaterian," Nature Communications, Nature, vol. 15(1), pages 1-11, December.

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