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ATAD5-BAZ1B interaction modulates PCNA ubiquitination during DNA repair

Author

Listed:
  • Yeongjae Kim

    (Institute for Basic Science
    Ulsan National Institute of Science and Technology)

  • Na Young Ha

    (Institute for Basic Science)

  • Mi-Sun Kang

    (Institute for Basic Science)

  • Eunjin Ryu

    (Institute for Basic Science
    Harvard Medical School)

  • Geunil Yi

    (Institute for Basic Science
    Ulsan National Institute of Science and Technology)

  • Juyeong Yoo

    (Institute for Basic Science
    Ulsan National Institute of Science and Technology)

  • Nalae Kang

    (Institute for Basic Science)

  • Byung-Gyu Kim

    (Institute for Basic Science)

  • Kyungjae Myung

    (Institute for Basic Science
    Ulsan National Institute of Science and Technology)

  • Sukhyun Kang

    (Institute for Basic Science)

Abstract

Mono-ubiquitinated PCNA (mono-Ub-PCNA) is generated when replication forks encounter obstacles, enabling the bypass of DNA lesions. After resolving stalled forks, Ub-PCNA must be de-ubiquitinated to resume high-fidelity DNA synthesis. ATAD5, in cooperation with the UAF1-USP1 complex, is responsible for this de-ubiquitination. However, the precise regulation of timely Ub-PCNA de-ubiquitination remains unclear. Our research reveals that BAZ1B, a regulatory subunit of the BAZ1B-SMARCA5 chromatin-remodeling complex (also known as the WICH complex), plays a crucial role in fine-tuning the de-ubiquitination process of Ub-PCNA. The BAZ1B binding region of ATAD5 encompasses the UAF1-binding domain of ATAD5. Disruption of the ATAD5-BAZ1B interaction results in premature de-ubiquitination of Ub-PCNA following treatment with hydrogen peroxide. Cells with impaired BAZ1B binding to ATAD5 display increased sensitivity to oxidative stress compared to wild-type cells. These findings suggest that BAZ1B prevents premature Ub-PCNA de-ubiquitination, thereby safeguarding genome integrity.

Suggested Citation

  • Yeongjae Kim & Na Young Ha & Mi-Sun Kang & Eunjin Ryu & Geunil Yi & Juyeong Yoo & Nalae Kang & Byung-Gyu Kim & Kyungjae Myung & Sukhyun Kang, 2024. "ATAD5-BAZ1B interaction modulates PCNA ubiquitination during DNA repair," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-55005-3
    DOI: 10.1038/s41467-024-55005-3
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    1. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    2. Martin Andrs & Henriette Stoy & Barbora Boleslavska & Nagaraja Chappidi & Radhakrishnan Kanagaraj & Zuzana Nascakova & Shruti Menon & Satyajeet Rao & Anna Oravetzova & Jana Dobrovolna & Kalpana Surend, 2023. "Excessive reactive oxygen species induce transcription-dependent replication stress," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    3. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    4. Gregory D. Bowman & Mike O'Donnell & John Kuriyan, 2004. "Structural analysis of a eukaryotic sliding DNA clamp–clamp loader complex," Nature, Nature, vol. 429(6993), pages 724-730, June.
    5. Mi-Sun Kang & Eunjin Ryu & Seung-Won Lee & Jieun Park & Na Young Ha & Jae Sun Ra & Yeong Jae Kim & Jinwoo Kim & Mohamed Abdel-Rahman & Su Hyung Park & Kyoo-young Lee & Hajin Kim & Sukhyun Kang & Kyung, 2019. "Regulation of PCNA cycling on replicating DNA by RFC and RFC-like complexes," Nature Communications, Nature, vol. 10(1), pages 1-16, December.
    6. Mariano Oppikofer & Meredith Sagolla & Benjamin Haley & Hui-Min Zhang & Sarah K. Kummerfeld & Jawahar Sudhamsu & E. Megan Flynn & Tianyi Bai & Jennifer Zhang & Claudio Ciferri & Andrea G. Cochran, 2017. "Non-canonical reader modules of BAZ1A promote recovery from DNA damage," Nature Communications, Nature, vol. 8(1), pages 1-15, December.
    7. Andrew Xiao & Haitao Li & David Shechter & Sung Hee Ahn & Laura A. Fabrizio & Hediye Erdjument-Bromage & Satoko Ishibe-Murakami & Bin Wang & Paul Tempst & Kay Hofmann & Dinshaw J. Patel & Stephen J. E, 2009. "WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity," Nature, Nature, vol. 457(7225), pages 57-62, January.
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