IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-53320-3.html
   My bibliography  Save this article

Bottom-up construction of chiral metal-peptide assemblies from metal cluster motifs

Author

Listed:
  • Pei-Ming Cheng

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

  • Tao Jia

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

  • Chong-Yang Li

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

  • Ming-Qiang Qi

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

  • Ming-Hao Du

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

  • Hai-Feng Su

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

  • Qing-Fu Sun

    (Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences)

  • La-Sheng Long

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

  • Lan-Sun Zheng

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

  • Xiang-Jian Kong

    (State Key Laboratory of Physical Chemistry of Solid Surfaces and Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University)

Abstract

The exploration of artificial metal-peptide assemblies (MPAs) is one of the most exciting fields because of their great potential for simulating the dynamics and functionality of natural proteins. However, unfavorable enthalpy changes make forming discrete complexes with large and adaptable cavities from flexible peptide ligands challenging. Here, we present a strategy integrating metal-cluster building blocks and peptides to create chiral metal-peptide assemblies and get a family of enantiopure [R-/S-Ni3L2]n (n = 2, 3, 6) MPAs, including the R-/S-Ni6L4 capsule, the S-Ni9L6 trigonal prism, and the R-/S-Ni18L12 octahedron cage. X-ray crystallography shows MPA formation reactions are highly solvent-condition-dependent, resulting in significant changes in ligand conformation and discrete cavity sizes. Moreover, we demonstrate that a structure transformation from Ni18L12 to Ni9L6 in the presence of benzopyrone molecules depends on the peptide conformational selection in crystallization. This work reveals that a metal-cluster building block approach enables facile bottom-up construction of artificial metal-peptide assemblies.

Suggested Citation

  • Pei-Ming Cheng & Tao Jia & Chong-Yang Li & Ming-Qiang Qi & Ming-Hao Du & Hai-Feng Su & Qing-Fu Sun & La-Sheng Long & Lan-Sun Zheng & Xiang-Jian Kong, 2024. "Bottom-up construction of chiral metal-peptide assemblies from metal cluster motifs," Nature Communications, Nature, vol. 15(1), pages 1-8, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-53320-3
    DOI: 10.1038/s41467-024-53320-3
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-53320-3
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-53320-3?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Alexandros P. Katsoulidis & Dmytro Antypov & George F. S. Whitehead & Elliot J. Carrington & Dave J. Adams & Neil G. Berry & George R. Darling & Matthew S. Dyer & Matthew J. Rosseinsky, 2019. "Chemical control of structure and guest uptake by a conformationally mobile porous material," Nature, Nature, vol. 565(7738), pages 213-217, January.
    2. Eyal Golub & Rohit H. Subramanian & Julian Esselborn & Robert G. Alberstein & Jake B. Bailey & Jerika A. Chiong & Xiaodong Yan & Timothy Booth & Timothy S. Baker & F. Akif Tezcan, 2020. "Constructing protein polyhedra via orthogonal chemical interactions," Nature, Nature, vol. 578(7793), pages 172-176, February.
    3. Yi Lu & Natasha Yeung & Nathan Sieracki & Nicholas M. Marshall, 2009. "Design of functional metalloproteins," Nature, Nature, vol. 460(7257), pages 855-862, August.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Yifan Gu & Jia-Jia Zheng & Ken-ichi Otake & Shigeyoshi Sakaki & Hirotaka Ashitani & Yoshiki Kubota & Shogo Kawaguchi & Ming-Shui Yao & Ping Wang & Ying Wang & Fengting Li & Susumu Kitagawa, 2023. "Soft corrugated channel with synergistic exclusive discrimination gating for CO2 recognition in gas mixture," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    2. Yangyang Xu & Tu Sun & Tengwu Zeng & Xiangyu Zhang & Xuan Yao & Shan Liu & Zhaolin Shi & Wen Wen & Yingbo Zhao & Shan Jiang & Yanhang Ma & Yue-Biao Zhang, 2023. "Symmetry-breaking dynamics in a tautomeric 3D covalent organic framework," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    3. Qingju Wang & Jianbo Hu & Lifeng Yang & Zhaoqiang Zhang & Tian Ke & Xili Cui & Huabin Xing, 2022. "One-step removal of alkynes and propadiene from cracking gases using a multi-functional molecular separator," Nature Communications, Nature, vol. 13(1), pages 1-8, December.
    4. Jabadurai Jayapaul & Sanna Komulainen & Vladimir V. Zhivonitko & Jiří Mareš & Chandan Giri & Kari Rissanen & Perttu Lantto & Ville-Veikko Telkki & Leif Schröder, 2022. "Hyper-CEST NMR of metal organic polyhedral cages reveals hidden diastereomers with diverse guest exchange kinetics," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    5. Sanahan Vijayakumar & Robert G. Alberstein & Zhiyin Zhang & Yi-Sheng Lu & Adriano Chan & Charlotte E. Wahl & James S. Ha & Deborah E. Hunka & Gerry R. Boss & Michael J. Sailor & F. Akif Tezcan, 2024. "Designed 2D protein crystals as dynamic molecular gatekeepers for a solid-state device," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    6. Lei Wei & Tu Sun & Zhaolin Shi & Zezhao Xu & Wen Wen & Shan Jiang & Yingbo Zhao & Yanhang Ma & Yue-Biao Zhang, 2022. "Guest-adaptive molecular sensing in a dynamic 3D covalent organic framework," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    7. Jin-Peng Xue & Yang Hu & Bo Zhao & Zhi-Kun Liu & Jing Xie & Zi-Shuo Yao & Jun Tao, 2022. "A spin-crossover framework endowed with pore-adjustable behavior by slow structural dynamics," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    8. Mao Hori & Angela Steinauer & Stephan Tetter & Jamiro Hälg & Eva-Maria Manz & Donald Hilvert, 2024. "Stimulus-responsive assembly of nonviral nucleocapsids," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    9. Xiaojun Ding & Jing Chen & Gang Ye, 2024. "Supramolecular polynuclear clusters sustained cubic hydrogen bonded frameworks with octahedral cages for reversible photochromism," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
    10. Ryunosuke Hayashi & Shohei Tashiro & Masahiro Asakura & Shinya Mitsui & Mitsuhiko Shionoya, 2023. "Effector-dependent structural transformation of a crystalline framework with allosteric effects on molecular recognition ability," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    11. Yan Su & Ken-ichi Otake & Jia-Jia Zheng & Ping Wang & Qing Lin & Susumu Kitagawa & Cheng Gu, 2024. "Diffusion-rate sieving of propylene and propane mixtures in a cooperatively dynamic porous crystal," Nature Communications, Nature, vol. 15(1), pages 1-8, December.
    12. Yong Peng & Hanting Xiong & Peixin Zhang & Zhiwei Zhao & Xing Liu & Shihui Tang & Yuan Liu & Zhenliang Zhu & Weizhen Zhou & Zhenning Deng & Junhui Liu & Yao Zhong & Zeliang Wu & Jingwen Chen & Zhenyu , 2024. "Interaction-selective molecular sieving adsorbent for direct separation of ethylene from senary C2-C4 olefin/paraffin mixture," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    13. Yun Li & Bo Zhao & Jin-Peng Xue & Jing Xie & Zi-Shuo Yao & Jun Tao, 2021. "Giant single-crystal-to-single-crystal transformations associated with chiral interconversion induced by elimination of chelating ligands," Nature Communications, Nature, vol. 12(1), pages 1-8, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-53320-3. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.