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CYpHER: catalytic extracellular targeted protein degradation with high potency and durable effect

Author

Listed:
  • Zachary R. Crook

    (Cyclera Therapeutics Inc
    Blaze Bioscience Inc
    Fred Hutchinson Research Center)

  • Gregory P. Sevilla

    (Cyclera Therapeutics Inc
    Blaze Bioscience Inc
    Fred Hutchinson Research Center)

  • Pamela Young

    (Blaze Bioscience Inc)

  • Emily J. Girard

    (Seattle Children’s Research Institute)

  • Tinh-Doan Phi

    (Blaze Bioscience Inc)

  • Monique L. Howard

    (NW Biosensor)

  • Jason Price

    (Fred Hutchinson Research Center)

  • James M. Olson

    (Fred Hutchinson Research Center
    Seattle Children’s Research Institute)

  • Natalie W. Nairn

    (Cyclera Therapeutics Inc
    Blaze Bioscience Inc)

Abstract

Many disease-causing proteins have multiple pathogenic mechanisms, and conventional inhibitors struggle to reliably disrupt more than one. Targeted protein degradation (TPD) can eliminate the protein, and thus all its functions, by directing a cell’s protein turnover machinery towards it. Two established strategies either engage catalytic E3 ligases or drive uptake towards the endolysosomal pathway. Here we describe CYpHER (CatalYtic pH-dependent Endolysosomal delivery with Recycling) technology with potency and durability from a catalytic mechanism that shares the specificity and straightforward modular design of endolysosomal uptake. By bestowing pH-dependent release on the target engager and using the rapid-cycling transferrin receptor as the uptake receptor, CYpHER induces endolysosomal delivery of surface and extracellular targets while re-using drug, potentially yielding increased potency and reduced off-target tissue exposure risks. The TfR-based approach allows targeting to tumors that overexpress this receptor and offers the potential for transport to the CNS. CYpHER function was demonstrated in vitro with EGFR and PD-L1, and in vivo with EGFR in a model of EGFR-driven non-small cell lung cancer.

Suggested Citation

  • Zachary R. Crook & Gregory P. Sevilla & Pamela Young & Emily J. Girard & Tinh-Doan Phi & Monique L. Howard & Jason Price & James M. Olson & Natalie W. Nairn, 2024. "CYpHER: catalytic extracellular targeted protein degradation with high potency and durable effect," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-52975-2
    DOI: 10.1038/s41467-024-52975-2
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    References listed on IDEAS

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    1. Sarel J Fleishman & Andrew Leaver-Fay & Jacob E Corn & Eva-Maria Strauch & Sagar D Khare & Nobuyasu Koga & Justin Ashworth & Paul Murphy & Florian Richter & Gordon Lemmon & Jens Meiler & David Baker, 2011. "RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite," PLOS ONE, Public Library of Science, vol. 6(6), pages 1-10, June.
    2. Steven M. Banik & Kayvon Pedram & Simon Wisnovsky & Green Ahn & Nicholas M. Riley & Carolyn R. Bertozzi, 2020. "Lysosome-targeting chimaeras for degradation of extracellular proteins," Nature, Nature, vol. 584(7820), pages 291-297, August.
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