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p53 promotes revival stem cells in the regenerating intestine after severe radiation injury

Author

Listed:
  • Clara Morral

    (University of Pennsylvania)

  • Arshad Ayyaz

    (Mount Sinai Hospital
    University of Calgary)

  • Hsuan-Cheng Kuo

    (Duke University)

  • Mardi Fink

    (Mount Sinai Hospital
    University of Toronto)

  • Ioannis I. Verginadis

    (University of Pennsylvania)

  • Andrea R. Daniel

    (Duke University)

  • Danielle N. Burner

    (Duke University)

  • Lucy M. Driver

    (Duke University
    Duke University)

  • Sloane Satow

    (Duke University)

  • Stephanie Hasapis

    (Duke University)

  • Reem Ghinnagow

    (University of Pennsylvania)

  • Lixia Luo

    (Duke University)

  • Yan Ma

    (Duke University)

  • Laura D. Attardi

    (Stanford University)

  • Constantinos Koumenis

    (University of Pennsylvania)

  • Andy J. Minn

    (University of Pennsylvania
    University of Pennsylvania
    University of Pennsylvania
    University of Pennsylvania)

  • Jeffrey L. Wrana

    (Mount Sinai Hospital
    University of Toronto)

  • Chang-Lung Lee

    (Duke University
    Duke University)

  • David G. Kirsch

    (Duke University
    Duke University
    University Health Network
    University of Toronto)

Abstract

Ionizing radiation induces cell death in the gastrointestinal (GI) epithelium by activating p53. However, p53 also prevents animal lethality caused by radiation-induced acute GI syndrome. Through single-cell RNA-sequencing of the irradiated mouse small intestine, we find that p53 target genes are specifically enriched in regenerating epithelial cells that undergo fetal-like reversion, including revival stem cells (revSCs) that promote animal survival after severe damage of the GI tract. Accordingly, in mice with p53 deleted specifically in the GI epithelium, ionizing radiation fails to induce fetal-like revSCs. Using intestinal organoids, we show that transient p53 expression is required for the induction of revival stem cells and is controlled by an Mdm2-mediated negative feedback loop. Together, our findings reveal that p53 suppresses severe radiation-induced GI injury by promoting fetal-like reprogramming of irradiated intestinal epithelial cells.

Suggested Citation

  • Clara Morral & Arshad Ayyaz & Hsuan-Cheng Kuo & Mardi Fink & Ioannis I. Verginadis & Andrea R. Daniel & Danielle N. Burner & Lucy M. Driver & Sloane Satow & Stephanie Hasapis & Reem Ghinnagow & Lixia , 2024. "p53 promotes revival stem cells in the regenerating intestine after severe radiation injury," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47124-8
    DOI: 10.1038/s41467-024-47124-8
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    References listed on IDEAS

    as
    1. Ygal Haupt & Ruth Maya & Anat Kazaz & Moshe Oren, 1997. "Mdm2 promotes the rapid degradation of p53," Nature, Nature, vol. 387(6630), pages 296-299, May.
    2. Ysbrand M. Nusse & Adam K. Savage & Pauline Marangoni & Axel K. M. Rosendahl-Huber & Tyler A. Landman & Frederic J. Sauvage & Richard M. Locksley & Ophir D. Klein, 2018. "Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche," Nature, Nature, vol. 559(7712), pages 109-113, July.
    3. Michael H. G. Kubbutat & Stephen N. Jones & Karen H. Vousden, 1997. "Regulation of p53 stability by Mdm2," Nature, Nature, vol. 387(6630), pages 299-303, May.
    4. Ysbrand M. Nusse & Adam K. Savage & Pauline Marangoni & Axel K. M. Rosendahl-Huber & Tyler A. Landman & Frederic J. Sauvage & Richard M. Locksley & Ophir D. Klein, 2018. "Publisher Correction: Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche," Nature, Nature, vol. 562(7727), pages 22-22, October.
    5. Nick Barker & Johan H. van Es & Jeroen Kuipers & Pekka Kujala & Maaike van den Born & Miranda Cozijnsen & Andrea Haegebarth & Jeroen Korving & Harry Begthel & Peter J. Peters & Hans Clevers, 2007. "Identification of stem cells in small intestine and colon by marker gene Lgr5," Nature, Nature, vol. 449(7165), pages 1003-1007, October.
    6. Toshiro Sato & Robert G. Vries & Hugo J. Snippert & Marc van de Wetering & Nick Barker & Daniel E. Stange & Johan H. van Es & Arie Abo & Pekka Kujala & Peter J. Peters & Hans Clevers, 2009. "Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche," Nature, Nature, vol. 459(7244), pages 262-265, May.
    7. Alex Gregorieff & Yu Liu & Mohammad R. Inanlou & Yuliya Khomchuk & Jeffrey L. Wrana, 2015. "Yap-dependent reprogramming of Lgr5+ stem cells drives intestinal regeneration and cancer," Nature, Nature, vol. 526(7575), pages 715-718, October.
    8. Arshad Ayyaz & Sandeep Kumar & Bruno Sangiorgi & Bibaswan Ghoshal & Jessica Gosio & Shaida Ouladan & Mardi Fink & Seda Barutcu & Daniel Trcka & Jess Shen & Kin Chan & Jeffrey L. Wrana & Alex Gregorief, 2019. "Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell," Nature, Nature, vol. 569(7754), pages 121-125, May.
    9. Shiaoching Gong & Chen Zheng & Martin L. Doughty & Kasia Losos & Nicholas Didkovsky & Uta B. Schambra & Norma J. Nowak & Alexandra Joyner & Gabrielle Leblanc & Mary E. Hatten & Nathaniel Heintz, 2003. "A gene expression atlas of the central nervous system based on bacterial artificial chromosomes," Nature, Nature, vol. 425(6961), pages 917-925, October.
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