IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-45008-5.html
   My bibliography  Save this article

Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda’s fitness landscape and enables speciation

Author

Listed:
  • Michael B. Doud

    (University of California San Diego
    University of California San Diego)

  • Animesh Gupta

    (University of California San Diego)

  • Victor Li

    (University of California San Diego)

  • Sarah J. Medina

    (University of California San Diego)

  • Caesar A. Fuente

    (University of California San Diego)

  • Justin R. Meyer

    (University of California San Diego)

Abstract

A major challenge in evolutionary biology is explaining how populations navigate rugged fitness landscapes without getting trapped on local optima. One idea illustrated by adaptive dynamics theory is that as populations adapt, their newly enhanced capacities to exploit resources alter fitness payoffs and restructure the landscape in ways that promote speciation by opening new adaptive pathways. While there have been indirect tests of this theory, to our knowledge none have measured how fitness landscapes deform during adaptation, or test whether these shifts promote diversification. Here, we achieve this by studying bacteriophage $$\lambda$$ λ , a virus that readily speciates into co-existing receptor specialists under controlled laboratory conditions. We use a high-throughput gene editing-phenotyping technology to measure $$\lambda$$ λ ’s fitness landscape in the presence of different evolved- $$\lambda$$ λ competitors and find that the fitness effects of individual mutations, and their epistatic interactions, depend on the competitor. Using these empirical data, we simulate $$\lambda$$ λ ’s evolution on an unchanging landscape and one that recapitulates how the landscape deforms during evolution. $$\lambda$$ λ heterogeneity only evolves in the shifting landscape regime. This study provides a test of adaptive dynamics, and, more broadly, shows how fitness landscapes dynamically change during adaptation, potentiating phenomena like speciation by opening new adaptive pathways.

Suggested Citation

  • Michael B. Doud & Animesh Gupta & Victor Li & Sarah J. Medina & Caesar A. Fuente & Justin R. Meyer, 2024. "Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda’s fitness landscape and enables speciation," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45008-5
    DOI: 10.1038/s41467-024-45008-5
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-45008-5
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-45008-5?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Ulf Dieckmann & Michael Doebeli, 1999. "On the origin of species by sympatric speciation," Nature, Nature, vol. 400(6742), pages 354-357, July.
    2. Harris H. Wang & Farren J. Isaacs & Peter A. Carr & Zachary Z. Sun & George Xu & Craig R. Forest & George M. Church, 2009. "Programming cells by multiplex genome engineering and accelerated evolution," Nature, Nature, vol. 460(7257), pages 894-898, August.
    3. U. Dieckmann & M. Doebeli, 1999. "On the Origin of Species by Sympatric Speciation," Working Papers ir99013, International Institute for Applied Systems Analysis.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Débarre, Florence & Otto, Sarah P., 2016. "Evolutionary dynamics of a quantitative trait in a finite asexual population," Theoretical Population Biology, Elsevier, vol. 108(C), pages 75-88.
    2. Jonathan Newton, 2017. "The preferences of Homo Moralis are unstable under evolving assortativity," International Journal of Game Theory, Springer;Game Theory Society, vol. 46(2), pages 583-589, May.
    3. Åke Brännström & Jacob Johansson & Niels Von Festenberg, 2013. "The Hitchhiker’s Guide to Adaptive Dynamics," Games, MDPI, vol. 4(3), pages 1-25, June.
    4. Alexandros Rigos & Heinrich H. Nax, 2015. "Assortativity evolving from social dilemmas," Discussion Papers in Economics 15/19, Division of Economics, School of Business, University of Leicester.
    5. Chaianunporn, Thotsapol & Hovestadt, Thomas, 2012. "Concurrent evolution of random dispersal and habitat niche width in host-parasitoid systems," Ecological Modelling, Elsevier, vol. 247(C), pages 241-250.
    6. Blath, Jochen & Paul, Tobias & Tóbiás, András & Wilke Berenguer, Maite, 2024. "The impact of dormancy on evolutionary branching," Theoretical Population Biology, Elsevier, vol. 156(C), pages 66-76.
    7. Boettiger, Carl & Dushoff, Jonathan & Weitz, Joshua S., 2010. "Fluctuation domains in adaptive evolution," Theoretical Population Biology, Elsevier, vol. 77(1), pages 6-13.
    8. Svardal, Hannes & Rueffler, Claus & Hermisson, Joachim, 2015. "A general condition for adaptive genetic polymorphism in temporally and spatially heterogeneous environments," Theoretical Population Biology, Elsevier, vol. 99(C), pages 76-97.
    9. Costa, Carolina L.N. & Marquitti, Flavia M.D. & Perez, S. Ivan & Schneider, David M. & Ramos, Marlon F. & de Aguiar, Marcus A.M., 2018. "Registering the evolutionary history in individual-based models of speciation," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 510(C), pages 1-14.
    10. Jonathan Newton, 2018. "Evolutionary Game Theory: A Renaissance," Games, MDPI, vol. 9(2), pages 1-67, May.
    11. Champagnat, Nicolas, 2006. "A microscopic interpretation for adaptive dynamics trait substitution sequence models," Stochastic Processes and their Applications, Elsevier, vol. 116(8), pages 1127-1160, August.
    12. E. Kisdi & F.J.A. Jacobs & S.A.H. Geritz, 2000. "Red Queen Evolution by Cycles of Evolutionary Branching and Extinction," Working Papers ir00030, International Institute for Applied Systems Analysis.
    13. Matessi, Carlo & Schneider, Kristan A., 2009. "Optimization under frequency-dependent selection," Theoretical Population Biology, Elsevier, vol. 76(1), pages 1-12.
    14. Gong, Yubing & Wang, Li & Xu, Bo, 2012. "Delay-induced diversity of firing behavior and ordered chaotic firing in adaptive neuronal networks," Chaos, Solitons & Fractals, Elsevier, vol. 45(4), pages 548-553.
    15. Ziwei Wang & Jiabin Wu, 2023. "Partner Choice and Morality: Preference Evolution under Stable Matching," Papers 2304.11504, arXiv.org, revised Oct 2023.
    16. Bagnoli, Franco & Guardiani, Carlo, 2005. "A model of sympatric speciation through assortative mating," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 347(C), pages 534-574.
    17. György Barabás & Christine Parent & Andrew Kraemer & Frederik Perre & Frederik Laender, 2022. "The evolution of trait variance creates a tension between species diversity and functional diversity," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    18. Bhattacharyay, A. & Drossel, B., 2005. "Modeling coevolution and sympatric speciation of flowers and pollinators," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 345(1), pages 159-172.
    19. Sakamoto, T. & Innan, H., 2020. "Establishment process of a magic trait allele subject to both divergent selection and assortative mating," Theoretical Population Biology, Elsevier, vol. 135(C), pages 9-18.
    20. Cook, James N. & Oono, Y., 2010. "Competitive localization," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(9), pages 1849-1860.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45008-5. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.