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Metallic micronutrients are associated with the structure and function of the soil microbiome

Author

Listed:
  • Zhongmin Dai

    (Zhejiang University
    Zhejiang University
    The Rural Development Academy at Zhejiang University, Zhejiang University)

  • Xu Guo

    (Zhejiang University
    Zhejiang University)

  • Jiahui Lin

    (Zhejiang University
    Zhejiang University)

  • Xiu Wang

    (Zhejiang University
    Zhejiang University)

  • Dan He

    (Zhejiang University
    Zhejiang University)

  • Rujiong Zeng

    (Zhejiang University
    Zhejiang University)

  • Jun Meng

    (Zhejiang University of Science and Technology)

  • Jipeng Luo

    (Zhejiang University)

  • Manuel Delgado-Baquerizo

    (Laboratorio de Biodiversidad y Funcionamiento Ecosistémico. Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC)

  • Eduardo Moreno-Jiménez

    (Universidad Autónoma de Madrid
    Universidad Autónoma de Madrid)

  • Philip C. Brookes

    (Zhejiang University
    Zhejiang University)

  • Jianming Xu

    (Zhejiang University
    Zhejiang University
    The Rural Development Academy at Zhejiang University, Zhejiang University)

Abstract

The relationship between metallic micronutrients and soil microorganisms, and thereby soil functioning, has been little explored. Here, we investigate the relationship between metallic micronutrients (Fe, Mn, Cu, Zn, Mo and Ni) and the abundance, diversity and function of soil microbiomes. In a survey across 180 sites in China, covering a wide range of soil conditions the structure and function of the soil microbiome are highly correlated with metallic micronutrients, especially Fe, followed by Mn, Cu and Zn. These results are robust to controlling for soil pH, which is often reported as the most important predictor of the soil microbiome. An incubation experiment with Fe and Zn additions for five different soil types also shows that increased micronutrient concentration affects microbial community composition and functional genes. In addition, structural equation models indicate that micronutrients positively contribute to the ecosystem productivity, both directly (micronutrient availability to plants) and, to a lesser extent, indirectly (via affecting the microbiome). Our findings highlight the importance of micronutrients in explaining soil microbiome structure and ecosystem functioning.

Suggested Citation

  • Zhongmin Dai & Xu Guo & Jiahui Lin & Xiu Wang & Dan He & Rujiong Zeng & Jun Meng & Jipeng Luo & Manuel Delgado-Baquerizo & Eduardo Moreno-Jiménez & Philip C. Brookes & Jianming Xu, 2023. "Metallic micronutrients are associated with the structure and function of the soil microbiome," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-44182-2
    DOI: 10.1038/s41467-023-44182-2
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    References listed on IDEAS

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    1. Manuel Delgado-Baquerizo & Fernando T. Maestre & Peter B. Reich & Thomas C. Jeffries & Juan J. Gaitan & Daniel Encinar & Miguel Berdugo & Colin D. Campbell & Brajesh K. Singh, 2016. "Microbial diversity drives multifunctionality in terrestrial ecosystems," Nature Communications, Nature, vol. 7(1), pages 1-8, April.
    2. Chen Chen & Han Y. H. Chen & Xinli Chen & Zhiqun Huang, 2019. "Meta-analysis shows positive effects of plant diversity on microbial biomass and respiration," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
    3. D. Gashu & P. C. Nalivata & T. Amede & E. L. Ander & E. H. Bailey & L. Botoman & C. Chagumaira & S. Gameda & S. M. Haefele & K. Hailu & E. J. M. Joy & A. A. Kalimbira & D. B. Kumssa & R. M. Lark & I. , 2021. "The nutritional quality of cereals varies geospatially in Ethiopia and Malawi," Nature, Nature, vol. 594(7861), pages 71-76, June.
    4. Ana Popovic & Celine Bourdon & Pauline W. Wang & David S. Guttman & Sajid Soofi & Zulfiqar A. Bhutta & Robert H. J. Bandsma & John Parkinson & Lisa G. Pell, 2021. "Micronutrient supplements can promote disruptive protozoan and fungal communities in the developing infant gut," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
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