scBridge embraces cell heterogeneity in single-cell RNA-seq and ATAC-seq data integration
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DOI: 10.1038/s41467-023-41795-5
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- Mahdi Zamanighomi & Zhixiang Lin & Timothy Daley & Xi Chen & Zhana Duren & Alicia Schep & William J. Greenleaf & Wing Hung Wong, 2018. "Unsupervised clustering and epigenetic classification of single cells," Nature Communications, Nature, vol. 9(1), pages 1-8, December.
- Christoph Kuppe & Ricardo O. Ramirez Flores & Zhijian Li & Sikander Hayat & Rebecca T. Levinson & Xian Liao & Monica T. Hannani & Jovan Tanevski & Florian Wünnemann & James S. Nagai & Maurice Halder &, 2022. "Spatial multi-omic map of human myocardial infarction," Nature, Nature, vol. 608(7924), pages 766-777, August.
- Shelley L. Berger, 2007. "The complex language of chromatin regulation during transcription," Nature, Nature, vol. 447(7143), pages 407-412, May.
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