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BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B12 uptake in gut Bacteroides

Author

Listed:
  • Javier Abellon-Ruiz

    (Newcastle University)

  • Kalyanashis Jana

    (Constructor University)

  • Augustinas Silale

    (Newcastle University)

  • Andrew M. Frey

    (Newcastle University)

  • Arnaud Baslé

    (Newcastle University)

  • Matthias Trost

    (Newcastle University)

  • Ulrich Kleinekathöfer

    (Constructor University)

  • Bert Berg

    (Newcastle University)

Abstract

Vitamin B12 (cobalamin) is required for most human gut microbes, many of which are dependent on scavenging to obtain this vitamin. Since bacterial densities in the gut are extremely high, competition for this keystone micronutrient is severe. Contrasting with Enterobacteria, members of the dominant genus Bacteroides often encode several BtuB vitamin B12 outer membrane transporters together with a conserved array of surface-exposed B12-binding lipoproteins. Here we show that the BtuB transporters from Bacteroides thetaiotaomicron form stable, pedal bin-like complexes with surface-exposed BtuG lipoprotein lids, which bind B12 with high affinities. Closing of the BtuG lid following B12 capture causes destabilisation of the bound B12 by a conserved BtuB extracellular loop, causing translocation of the vitamin to BtuB and subsequent transport. We propose that TonB-dependent, lipoprotein-assisted small molecule uptake is a general feature of Bacteroides spp. that is important for the success of this genus in colonising the human gut.

Suggested Citation

  • Javier Abellon-Ruiz & Kalyanashis Jana & Augustinas Silale & Andrew M. Frey & Arnaud Baslé & Matthias Trost & Ulrich Kleinekathöfer & Bert Berg, 2023. "BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B12 uptake in gut Bacteroides," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40427-2
    DOI: 10.1038/s41467-023-40427-2
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    1. Patrice Rassam & Nikki A. Copeland & Oliver Birkholz & Csaba Tóth & Matthieu Chavent & Anna L. Duncan & Stephen J. Cross & Nicholas G. Housden & Renata Kaminska & Urban Seger & Diana M. Quinn & Tamsin, 2015. "Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria," Nature, Nature, vol. 523(7560), pages 333-336, July.
    2. Amy J. Glenwright & Karunakar R. Pothula & Satya P. Bhamidimarri & Dror S. Chorev & Arnaud Baslé & Susan J. Firbank & Hongjun Zheng & Carol V. Robinson & Mathias Winterhalter & Ulrich Kleinekathöfer &, 2017. "Structural basis for nutrient acquisition by dominant members of the human gut microbiota," Nature, Nature, vol. 541(7637), pages 407-411, January.
    3. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    4. Declan A. Gray & Joshua B. R. White & Abraham O. Oluwole & Parthasarathi Rath & Amy J. Glenwright & Adam Mazur & Michael Zahn & Arnaud Baslé & Carl Morland & Sasha L. Evans & Alan Cartmell & Carol V. , 2021. "Insights into SusCD-mediated glycan import by a prominent gut symbiont," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
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