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Cryo-EM structure of a RAS/RAF recruitment complex

Author

Listed:
  • Eunyoung Park

    (Dana-Farber Cancer Institute
    Harvard Medical School
    Pfizer R&D Center)

  • Shaun Rawson

    (Harvard Medical School)

  • Anna Schmoker

    (Dana-Farber Cancer Institute)

  • Byeong-Won Kim

    (Dana-Farber Cancer Institute
    Osong Medical Innovation Foundation)

  • Sehee Oh

    (Dana-Farber Cancer Institute)

  • Kangkang Song

    (University of Massachusetts Chan Medical School)

  • Hyesung Jeon

    (Dana-Farber Cancer Institute
    Harvard Medical School)

  • Michael J. Eck

    (Dana-Farber Cancer Institute
    Harvard Medical School)

Abstract

RAF-family kinases are activated by recruitment to the plasma membrane by GTP-bound RAS, whereupon they initiate signaling through the MAP kinase cascade. Prior structural studies of KRAS with RAF have focused on the isolated RAS-binding and cysteine-rich domains of RAF (RBD and CRD, respectively), which interact directly with RAS. Here we describe cryo-EM structures of a KRAS bound to intact BRAF in an autoinhibited state with MEK1 and a 14-3-3 dimer. Analysis of this KRAS/BRAF/MEK1/14-3-3 complex reveals KRAS bound to the RAS-binding domain of BRAF, captured in two orientations. Core autoinhibitory interactions in the complex are unperturbed by binding of KRAS and in vitro activation studies confirm that KRAS binding is insufficient to activate BRAF, absent membrane recruitment. These structures illustrate the separability of binding and activation of BRAF by RAS and suggest stabilization of this pre-activation intermediate as an alternative therapeutic strategy to blocking binding of KRAS.

Suggested Citation

  • Eunyoung Park & Shaun Rawson & Anna Schmoker & Byeong-Won Kim & Sehee Oh & Kangkang Song & Hyesung Jeon & Michael J. Eck, 2023. "Cryo-EM structure of a RAS/RAF recruitment complex," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40299-6
    DOI: 10.1038/s41467-023-40299-6
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    References listed on IDEAS

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    1. Eunyoung Park & Shaun Rawson & Kunhua Li & Byeong-Won Kim & Scott B. Ficarro & Gonzalo Gonzalez-Del Pino & Humayun Sharif & Jarrod A. Marto & Hyesung Jeon & Michael J. Eck, 2019. "Architecture of autoinhibited and active BRAF–MEK1–14-3-3 complexes," Nature, Nature, vol. 575(7783), pages 545-550, November.
    2. Helen Davies & Graham R. Bignell & Charles Cox & Philip Stephens & Sarah Edkins & Sheila Clegg & Jon Teague & Hayley Woffendin & Mathew J. Garnett & William Bottomley & Neil Davis & Ed Dicks & Rebecca, 2002. "Mutations of the BRAF gene in human cancer," Nature, Nature, vol. 417(6892), pages 949-954, June.
    3. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    4. Zachary J. Hauseman & Michelle Fodor & Anxhela Dhembi & Jessica Viscomi & David Egli & Melusine Bleu & Stephanie Katz & Eunyoung Park & Dong Man Jang & Kathryn A. Porter & Fabian Meili & Hongqiu Guo &, 2022. "Structure of the MRAS–SHOC2–PP1C phosphatase complex," Nature, Nature, vol. 609(7926), pages 416-423, September.
    5. Timothy H. Tran & Albert H. Chan & Lucy C. Young & Lakshman Bindu & Chris Neale & Simon Messing & Srisathiyanarayanan Dharmaiah & Troy Taylor & John-Paul Denson & Dominic Esposito & Dwight V. Nissley , 2021. "KRAS interaction with RAF1 RAS-binding domain and cysteine-rich domain provides insights into RAS-mediated RAF activation," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
    6. Jason J. Kwon & Behnoush Hajian & Yuemin Bian & Lucy C. Young & Alvaro J. Amor & James R. Fuller & Cara V. Fraley & Abbey M. Sykes & Jonathan So & Joshua Pan & Laura Baker & Sun Joo Lee & Douglas B. W, 2022. "Structure–function analysis of the SHOC2–MRAS–PP1C holophosphatase complex," Nature, Nature, vol. 609(7926), pages 408-415, September.
    7. Juliana A. Martinez Fiesco & David E. Durrant & Deborah K. Morrison & Ping Zhang, 2022. "Structural insights into the BRAF monomer-to-dimer transition mediated by RAS binding," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    8. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    9. Thanashan Rajakulendran & Malha Sahmi & Martin Lefrançois & Frank Sicheri & Marc Therrien, 2009. "A dimerization-dependent mechanism drives RAF catalytic activation," Nature, Nature, vol. 461(7263), pages 542-545, September.
    10. Hugo Lavoie & Malha Sahmi & Pierre Maisonneuve & Sara A. Marullo & Neroshan Thevakumaran & Ting Jin & Igor Kurinov & Frank Sicheri & Marc Therrien, 2018. "MEK drives BRAF activation through allosteric control of KSR proteins," Nature, Nature, vol. 554(7693), pages 549-553, February.
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