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Phytochrome B photobodies are comprised of phytochrome B and its primary and secondary interacting proteins

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Listed:
  • Chanhee Kim

    (Korea Advanced Institute of Science and Technology)

  • Yongmin Kwon

    (Korea Advanced Institute of Science and Technology)

  • Jaehoon Jeong

    (Korea Advanced Institute of Science and Technology)

  • Minji Kang

    (Korea Advanced Institute of Science and Technology)

  • Ga Seul Lee

    (Korea Research Institute of Bioscience and Biotechnology
    Chungbuk National University)

  • Jeong Hee Moon

    (Korea Research Institute of Bioscience and Biotechnology)

  • Hyo-Jun Lee

    (Korea Research Institute of Bioscience and Biotechnology)

  • Youn-Il Park

    (Chungnam National University)

  • Giltsu Choi

    (Korea Advanced Institute of Science and Technology)

Abstract

Phytochrome B (phyB) is a plant photoreceptor that forms a membraneless organelle called a photobody. However, its constituents are not fully known. Here, we isolated phyB photobodies from Arabidopsis leaves using fluorescence-activated particle sorting and analyzed their components. We found that a photobody comprises ~1,500 phyB dimers along with other proteins that could be classified into two groups: The first includes proteins that directly interact with phyB and localize to the photobody when expressed in protoplasts, while the second includes proteins that interact with the first group proteins and require co-expression of a first-group protein to localize to the photobody. As an example of the second group, TOPLESS interacts with PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 (PCH1) and localizes to the photobody when co-expressed with PCH1. Together, our results support that phyB photobodies include not only phyB and its primary interacting proteins but also its secondary interacting proteins.

Suggested Citation

  • Chanhee Kim & Yongmin Kwon & Jaehoon Jeong & Minji Kang & Ga Seul Lee & Jeong Hee Moon & Hyo-Jun Lee & Youn-Il Park & Giltsu Choi, 2023. "Phytochrome B photobodies are comprised of phytochrome B and its primary and secondary interacting proteins," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37421-z
    DOI: 10.1038/s41467-023-37421-z
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    1. Qing Liu & Qin Wang & Weixian Deng & Xu Wang & Mingxin Piao & Dawei Cai & Yaxing Li & William D. Barshop & Xiaolan Yu & Tingting Zhou & Bin Liu & Yoshito Oka & James Wohlschlegel & Zecheng Zuo & Chent, 2017. "Molecular basis for blue light-dependent phosphorylation of Arabidopsis cryptochrome 2," Nature Communications, Nature, vol. 8(1), pages 1-12, August.
    2. Weimin Ni & Shou-Ling Xu & Eduardo González-Grandío & Robert J. Chalkley & Andreas F. R. Huhmer & Alma L. Burlingame & Zhi-Yong Wang & Peter H. Quail, 2017. "PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3," Nature Communications, Nature, vol. 8(1), pages 1-11, August.
    3. Dmitri A. Nusinow & Anne Helfer & Elizabeth E. Hamilton & Jasmine J. King & Takato Imaizumi & Thomas F. Schultz & Eva M. Farré & Steve A. Kay, 2011. "The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth," Nature, Nature, vol. 475(7356), pages 398-402, July.
    4. Joseph Hahm & Keunhwa Kim & Yongjian Qiu & Meng Chen, 2020. "Publisher Correction: Increasing ambient temperature progressively disassembles Arabidopsis phytochrome B from individual photobodies with distinct thermostabilities," Nature Communications, Nature, vol. 11(1), pages 1-1, December.
    5. Martina Legris & Yetkin Çaka Ince & Christian Fankhauser, 2019. "Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
    6. Chan Yul Yoo & Elise K. Pasoreck & He Wang & Jun Cao & Gregor M. Blaha & Detlef Weigel & Meng Chen, 2019. "Phytochrome activates the plastid-encoded RNA polymerase for chloroplast biogenesis via nucleus-to-plastid signaling," Nature Communications, Nature, vol. 10(1), pages 1-16, December.
    7. Joseph Hahm & Keunhwa Kim & Yongjian Qiu & Meng Chen, 2020. "Increasing ambient temperature progressively disassembles Arabidopsis phytochrome B from individual photobodies with distinct thermostabilities," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    8. Beatrix Enderle & David J. Sheerin & Inyup Paik & Praveen Kumar Kathare & Philipp Schwenk & Cornelia Klose & Maximilian H. Ulbrich & Enamul Huq & Andreas Hiltbrunner, 2017. "PCH1 and PCHL promote photomorphogenesis in plants by controlling phytochrome B dark reversion," Nature Communications, Nature, vol. 8(1), pages 1-9, December.
    9. Emily J. Yang & Chan Yul Yoo & Jiangxin Liu & He Wang & Jun Cao & Fay-Wei Li & Kathleen M. Pryer & Tai-ping Sun & Detlef Weigel & Pei Zhou & Meng Chen, 2019. "NCP activates chloroplast transcription by controlling phytochrome-dependent dual nuclear and plastidial switches," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
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