The genomic landscape of reference genomes of cultivated human gut bacteria
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DOI: 10.1038/s41467-023-37396-x
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- R. Gacesa & A. Kurilshikov & A. Vich Vila & T. Sinha & M. A. Y. Klaassen & L. A. Bolte & S. Andreu-Sánchez & L. Chen & V. Collij & S. Hu & J. A. M. Dekens & V. C. Lenters & J. R. Björk & J. C. Swarte , 2022. "Environmental factors shaping the gut microbiome in a Dutch population," Nature, Nature, vol. 604(7907), pages 732-739, April.
- Alexander Crits-Christoph & Spencer Diamond & Cristina N. Butterfield & Brian C. Thomas & Jillian F. Banfield, 2018. "Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis," Nature, Nature, vol. 558(7710), pages 440-444, June.
- Basem Al-Shayeb & Rohan Sachdeva & Lin-Xing Chen & Fred Ward & Patrick Munk & Audra Devoto & Cindy J. Castelle & Matthew R. Olm & Keith Bouma-Gregson & Yuki Amano & Christine He & Raphaël Méheust & Br, 2020. "Clades of huge phages from across Earth’s ecosystems," Nature, Nature, vol. 578(7795), pages 425-431, February.
- Michael Jakob Pichler & Chihaya Yamada & Bashar Shuoker & Camila Alvarez-Silva & Aina Gotoh & Maria Louise Leth & Erwin Schoof & Toshihiko Katoh & Mikiyasu Sakanaka & Takane Katayama & Chunsheng Jin &, 2020. "Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways," Nature Communications, Nature, vol. 11(1), pages 1-15, December.
- Koji Yahara & Masato Suzuki & Aki Hirabayashi & Wataru Suda & Masahira Hattori & Yutaka Suzuki & Yusuke Okazaki, 2021. "Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
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