IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-36628-4.html
   My bibliography  Save this article

A density functional theory for ecology across scales

Author

Listed:
  • Martin-I. Trappe

    (National University of Singapore
    National University of Singapore)

  • Ryan A. Chisholm

    (National University of Singapore)

Abstract

Ecology lacks a holistic approach that can model phenomena across temporal and spatial scales, largely because of the challenges in modelling systems with a large number of interacting constituents. This hampers our understanding of complex ecosystems and the impact that human interventions (e.g., deforestation, wildlife harvesting and climate change) have on them. Here we use density functional theory, a computational method for many-body problems in physics, to develop a computational framework for ecosystem modelling. Our methods accurately fit experimental and synthetic data of interacting multi-species communities across spatial scales and can project to unseen data. As the key concept we establish and validate a cost function that encodes the trade-offs between the various ecosystem components. We show how this single general modelling framework delivers predictions on par with established, but specialised, approaches for systems from predatory microbes to territorial flies to tropical tree communities. Our density functional framework thus provides a promising avenue for advancing our understanding of ecological systems.

Suggested Citation

  • Martin-I. Trappe & Ryan A. Chisholm, 2023. "A density functional theory for ecology across scales," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36628-4
    DOI: 10.1038/s41467-023-36628-4
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-36628-4
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-36628-4?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Jacopo Grilli & György Barabás & Matthew J. Michalska-Smith & Stefano Allesina, 2017. "Higher-order interactions stabilize dynamics in competitive network models," Nature, Nature, vol. 548(7666), pages 210-213, August.
    2. Filippo Simini & Marta C. González & Amos Maritan & Albert-László Barabási, 2012. "A universal model for mobility and migration patterns," Nature, Nature, vol. 484(7392), pages 96-100, April.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Chen, Yanguang, 2023. "Demonstration of duality of fractal gravity models by scaling symmetry," Chaos, Solitons & Fractals, Elsevier, vol. 170(C).
    2. Brandl, Florian & Brandt, Felix, 2024. "A natural adaptive process for collective decision-making," Theoretical Economics, Econometric Society, vol. 19(2), May.
    3. Tranos, Emmanouil & Incera, Andre Carrascal & Willis, George, 2022. "Using the web to predict regional trade flows: data extraction, modelling, and validation," OSF Preprints 9bu5z, Center for Open Science.
    4. Huang, Feihu & Qiao, Shaojie & Peng, Jian & Guo, Bing & Xiong, Xi & Han, Nan, 2019. "A movement model for air passengers based on trip purpose," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 525(C), pages 798-808.
    5. Varga, Levente & Tóth, Géza & Néda, Zoltán, 2017. "An improved radiation model and its applicability for understanding commuting patterns in Hungary," MPRA Paper 76806, University Library of Munich, Germany.
    6. Sgrignoli, Paolo & Metulini, Rodolfo & Schiavo, Stefano & Riccaboni, Massimo, 2015. "The relation between global migration and trade networks," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 417(C), pages 245-260.
    7. Luca Gallo & Lucas Lacasa & Vito Latora & Federico Battiston, 2024. "Higher-order correlations reveal complex memory in temporal hypergraphs," Nature Communications, Nature, vol. 15(1), pages 1-7, December.
    8. James Truscott & Neil M Ferguson, 2012. "Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling," PLOS Computational Biology, Public Library of Science, vol. 8(10), pages 1-12, October.
    9. Chen, Yong & Geng, Maosi & Zeng, Jiaqi & Yang, Di & Zhang, Lei & Chen, Xiqun (Michael), 2023. "A novel ensemble model with conditional intervening opportunities for ride-hailing travel mobility estimation," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 628(C).
    10. Liu, Run-Ran & Chu, Changchang & Meng, Fanyuan, 2023. "Higher-order interdependent percolation on hypergraphs," Chaos, Solitons & Fractals, Elsevier, vol. 177(C).
    11. Chaogui Kang & Yu Liu & Diansheng Guo & Kun Qin, 2015. "A Generalized Radiation Model for Human Mobility: Spatial Scale, Searching Direction and Trip Constraint," PLOS ONE, Public Library of Science, vol. 10(11), pages 1-11, November.
    12. Gerrit Ansmann & Tobias Bollenbach, 2021. "Building clone-consistent ecosystem models," PLOS Computational Biology, Public Library of Science, vol. 17(2), pages 1-25, February.
    13. Luo, Xiaohu & Caron, Justin & Karplus, Valerie J. & Zhang, Da & Zhang, Xiliang, 2016. "Interprovincial migration and the stringency of energy policy in China," Energy Economics, Elsevier, vol. 58(C), pages 164-173.
    14. Mark Thissen & Olga Ivanova & Giovanni Mandras & Trond Husby, 2019. "European NUTS 2 regions: construction of interregional trade-linked Supply and Use tables with consistent transport flows," JRC Working Papers on Territorial Modelling and Analysis 2019-01, Joint Research Centre.
    15. Thompson, C.A. & Saxberg, K. & Lega, J. & Tong, D. & Brown, H.E., 2019. "A cumulative gravity model for inter-urban spatial interaction at different scales," Journal of Transport Geography, Elsevier, vol. 79(C), pages 1-1.
    16. Gonzalo Suarez & Rachata Muneepeerakul, 2022. "Modeling human migration driven by changing mindset, agglomeration, social ties, and the environment," PLOS ONE, Public Library of Science, vol. 17(2), pages 1-11, February.
    17. Rosita De Vincentis & Federico Karagulian & Carlo Liberto & Marialisa Nigro & Vincenza Rosati & Gaetano Valenti, 2022. "A Data-Driven Approach to Analyze Mobility Patterns and the Built Environment: Evidence from Brescia, Catania, and Salerno (Italy)," Sustainability, MDPI, vol. 14(21), pages 1-14, November.
    18. Vinyas Harish & Felipe J. Colón-González & Filipe R. R. Moreira & Rory Gibb & Moritz U. G. Kraemer & Megan Davis & Robert C. Reiner & David M. Pigott & T. Alex Perkins & Daniel J. Weiss & Isaac I. Bog, 2024. "Human movement and environmental barriers shape the emergence of dengue," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    19. Animesh Gain & Vahid Mojtahed & Claudio Biscaro & Stefano Balbi & Carlo Giupponi, 2015. "An integrated approach of flood risk assessment in the eastern part of Dhaka City," Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, Springer;International Society for the Prevention and Mitigation of Natural Hazards, vol. 79(3), pages 1499-1530, December.
    20. Wang, Wenjun & Pan, Lin & Yuan, Ning & Zhang, Sen & Liu, Dong, 2015. "A comparative analysis of intra-city human mobility by taxi," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 420(C), pages 134-147.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36628-4. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.