IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-34017-x.html
   My bibliography  Save this article

Cryo-EM structures of thermostabilized prestin provide mechanistic insights underlying outer hair cell electromotility

Author

Listed:
  • Haon Futamata

    (The University of Tokyo, Bunkyo-ku)

  • Masahiro Fukuda

    (The University of Tokyo, Bunkyo-ku
    The University of Tokyo; Meguro-ku)

  • Rie Umeda

    (The University of Tokyo, Bunkyo-ku)

  • Keitaro Yamashita

    (The University of Tokyo, Bunkyo-ku
    MRC Laboratory of Molecular Biology)

  • Atsuhiro Tomita

    (The University of Tokyo, Bunkyo-ku)

  • Satoe Takahashi

    (Northwestern University)

  • Takafumi Shikakura

    (Kyoto University, Kitashirakawa, Oiwake-cho, Sakyo-ku)

  • Shigehiko Hayashi

    (Kyoto University, Kitashirakawa, Oiwake-cho, Sakyo-ku)

  • Tsukasa Kusakizako

    (The University of Tokyo, Bunkyo-ku)

  • Tomohiro Nishizawa

    (The University of Tokyo, Bunkyo-ku
    Yokohama City University)

  • Kazuaki Homma

    (Northwestern University
    Northwestern University)

  • Osamu Nureki

    (The University of Tokyo, Bunkyo-ku)

Abstract

Outer hair cell elecromotility, driven by prestin, is essential for mammalian cochlear amplification. Here, we report the cryo-EM structures of thermostabilized prestin (PresTS), complexed with chloride, sulfate, or salicylate at 3.52-3.63 Å resolutions. The central positively-charged cavity allows flexible binding of various anion species, which likely accounts for the known distinct modulations of nonlinear capacitance (NLC) by different anions. Comparisons of these PresTS structures with recent prestin structures suggest rigid-body movement between the core and gate domains, and provide mechanistic insights into prestin inhibition by salicylate. Mutations at the dimeric interface severely diminished NLC, suggesting that stabilization of the gate domain facilitates core domain movement, thereby contributing to the expression of NLC. These findings advance our understanding of the molecular mechanism underlying mammalian cochlear amplification.

Suggested Citation

  • Haon Futamata & Masahiro Fukuda & Rie Umeda & Keitaro Yamashita & Atsuhiro Tomita & Satoe Takahashi & Takafumi Shikakura & Shigehiko Hayashi & Tsukasa Kusakizako & Tomohiro Nishizawa & Kazuaki Homma &, 2022. "Cryo-EM structures of thermostabilized prestin provide mechanistic insights underlying outer hair cell electromotility," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34017-x
    DOI: 10.1038/s41467-022-34017-x
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-34017-x
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-022-34017-x?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Yung-Ning Chang & Eva A. Jaumann & Katrin Reichel & Julia Hartmann & Dominik Oliver & Gerhard Hummer & Benesh Joseph & Eric R. Geertsma, 2019. "Structural basis for functional interactions in dimers of SLC26 transporters," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
    2. Carmen Butan & Qiang Song & Jun-Ping Bai & Winston J. T. Tan & Dhasakumar Navaratnam & Joseph Santos-Sacchi, 2022. "Single particle cryo-EM structure of the outer hair cell motor protein prestin," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    3. Dmitry Gorbunov & Mattia Sturlese & Florian Nies & Murielle Kluge & Massimo Bellanda & Roberto Battistutta & Dominik Oliver, 2014. "Molecular architecture and the structural basis for anion interaction in prestin and SLC26 transporters," Nature Communications, Nature, vol. 5(1), pages 1-13, May.
    4. Feiran Lu & Shuo Li & Yang Jiang & Jing Jiang & He Fan & Guifeng Lu & Dong Deng & Shangyu Dang & Xu Zhang & Jiawei Wang & Nieng Yan, 2011. "Structure and mechanism of the uracil transporter UraA," Nature, Nature, vol. 472(7342), pages 243-246, April.
    5. Navid Bavi & Michael David Clark & Gustavo F. Contreras & Rong Shen & Bharat G. Reddy & Wieslawa Milewski & Eduardo Perozo, 2021. "The conformational cycle of prestin underlies outer-hair cell electromotility," Nature, Nature, vol. 600(7889), pages 553-558, December.
    6. Lie Wang & Kehan Chen & Ming Zhou, 2021. "Structure and function of an Arabidopsis thaliana sulfate transporter," Nature Communications, Nature, vol. 12(1), pages 1-8, December.
    7. M. Charles Liberman & Jiangang Gao & David Z. Z. He & Xudong Wu & Shuping Jia & Jian Zuo, 2002. "Prestin is required for electromotility of the outer hair cell and for the cochlear amplifier," Nature, Nature, vol. 419(6904), pages 300-304, September.
    8. Juan C. Canul-Tec & Reda Assal & Erica Cirri & Pierre Legrand & Sébastien Brier & Julia Chamot-Rooke & Nicolas Reyes, 2017. "Structure and allosteric inhibition of excitatory amino acid transporter 1," Nature, Nature, vol. 544(7651), pages 446-451, April.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Qianying Liu & Xiang Zhang & Hui Huang & Yuxin Chen & Fang Wang & Aihua Hao & Wuqiang Zhan & Qiyu Mao & Yuxia Hu & Lin Han & Yifang Sun & Meng Zhang & Zhimin Liu & Geng-Lin Li & Weijia Zhang & Yilai S, 2023. "Asymmetric pendrin homodimer reveals its molecular mechanism as anion exchanger," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    2. Lie Wang & Anthony Hoang & Eva Gil-Iturbe & Arthur Laganowsky & Matthias Quick & Ming Zhou, 2024. "Mechanism of anion exchange and small-molecule inhibition of pendrin," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    3. Wenxin Hu & Alex Song & Hongjin Zheng, 2024. "Substrate binding plasticity revealed by Cryo-EM structures of SLC26A2," Nature Communications, Nature, vol. 15(1), pages 1-9, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Wenxin Hu & Alex Song & Hongjin Zheng, 2024. "Substrate binding plasticity revealed by Cryo-EM structures of SLC26A2," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
    2. Makoto F. Kuwabara & Bassam G. Haddad & Dominik Lenz-Schwab & Julia Hartmann & Piersilvio Longo & Britt-Marie Huckschlag & Anneke Fuß & Annalisa Questino & Thomas K. Berger & Jan-Philipp Machtens & Do, 2023. "Elevator-like movements of prestin mediate outer hair cell electromotility," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    3. Qianying Liu & Xiang Zhang & Hui Huang & Yuxin Chen & Fang Wang & Aihua Hao & Wuqiang Zhan & Qiyu Mao & Yuxia Hu & Lin Han & Yifang Sun & Meng Zhang & Zhimin Liu & Geng-Lin Li & Weijia Zhang & Yilai S, 2023. "Asymmetric pendrin homodimer reveals its molecular mechanism as anion exchanger," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    4. Sepehr Dehghani-Ghahnaviyeh & Zhiyu Zhao & Emad Tajkhorshid, 2022. "Lipid-mediated prestin organization in outer hair cell membranes and its implications in sound amplification," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    5. Lie Wang & Anthony Hoang & Eva Gil-Iturbe & Arthur Laganowsky & Matthias Quick & Ming Zhou, 2024. "Mechanism of anion exchange and small-molecule inhibition of pendrin," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    6. Mingxing Wang & Jin He & Shanshan Li & Qianwen Cai & Kaiming Zhang & Ji She, 2023. "Structural basis of vitamin C recognition and transport by mammalian SVCT1 transporter," Nature Communications, Nature, vol. 14(1), pages 1-8, December.
    7. Adam Sheppard & Massimo Ralli & Antonio Gilardi & Richard Salvi, 2020. "Occupational Noise: Auditory and Non-Auditory Consequences," IJERPH, MDPI, vol. 17(23), pages 1-15, December.
    8. Qing Zhang & Liyan Jian & Deqiang Yao & Bing Rao & Ying Xia & Kexin Hu & Shaobai Li & Yafeng Shen & Mi Cao & An Qin & Jie Zhao & Yu Cao, 2023. "The structural basis of the pH-homeostasis mediated by the Cl−/HCO3− exchanger, AE2," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    9. Ken-ichi Dewa & Nariko Arimura & Wataru Kakegawa & Masayuki Itoh & Toma Adachi & Satoshi Miyashita & Yukiko U. Inoue & Kento Hizawa & Kei Hori & Natsumi Honjoya & Haruya Yagishita & Shinichiro Taya & , 2024. "Neuronal DSCAM regulates the peri-synaptic localization of GLAST in Bergmann glia for functional synapse formation," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    10. Biao Qiu & Olga Boudker, 2023. "Symport and antiport mechanisms of human glutamate transporters," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    11. Takafumi Kato & Tsukasa Kusakizako & Chunhuan Jin & Xinyu Zhou & Ryuichi Ohgaki & LiLi Quan & Minhui Xu & Suguru Okuda & Kan Kobayashi & Keitaro Yamashita & Tomohiro Nishizawa & Yoshikatsu Kanai & Osa, 2022. "Structural insights into inhibitory mechanism of human excitatory amino acid transporter EAAT2," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    12. Lie Wang & Ming Zhou, 2023. "Structure of a eukaryotic cholinephosphotransferase-1 reveals mechanisms of substrate recognition and catalysis," Nature Communications, Nature, vol. 14(1), pages 1-8, December.
    13. Mingfeng Zhang & Yuanyue Shan & Charles D. Cox & Duanqing Pei, 2023. "A mechanical-coupling mechanism in OSCA/TMEM63 channel mechanosensitivity," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    14. Zhenglai Zhang & Huiwen Chen & Ze Geng & Zhuoya Yu & Hang Li & Yanli Dong & Hongwei Zhang & Zhuo Huang & Juquan Jiang & Yan Zhao, 2022. "Structural basis of ligand binding modes of human EAAT2," Nature Communications, Nature, vol. 13(1), pages 1-10, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34017-x. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.